BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493141
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17360.1 | Symbols: | Formyl transferase | chr4:9703547-970... 1864 0.0
AT4G17350.1 | Symbols: | Plant protein of unknown function (DU... 52.8 7e-06
> AT4G17360.1 | Symbols: | Formyl transferase | chr4:9703547-9705468
REVERSE LENGTH=1138
Length=1138
Score = 1864 bits (1009), Expect = 0.0
Identities = 1095/1138 (96%), Gaps = 0/1138 (0%)
Strand=Plus/Plus
Query 1 ATGATACGAAAAGTCTCCACCACCTCATGTCTCTCCGCCACAGCTTTTAGATCATTTACA 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATACGAAGAGTCTCCACCACCTCATGTCTCTCCGCCACAGCTTTTAGATCATTTACC 60
Query 61 AAATGGTCCTTTAATTCCTCTCAATTTCACGGCGAGTCCCTCGATTCCTCTGTCTCACCT 120
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAATGGTCCTTTAAATCTTCTCAATTTCACGGCGAGTCCCTCGATTCCTCTGTCTCACCT 120
Query 121 CTTCTCATCCCCGGCGTCCACGTCTTCCATTGTCCGGATGTGGTTGGGATTGTAGCCAAA 180
|||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 121 CTTCTCATTCCCGGCTTCCACGTCTTCCATTGTCCGGATGTCGTTGGGATTGTAGCGAAA 180
Query 181 CTATCAGATTGTATTGCTGCTAAAGGAGGAAACATTCTTGGTTACGATGTTTTTGTTCCT 240
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 181 CTTTCAGATTGTATTGCTGCTAAAGGAGGTAACATTCTTGGTTATGATGTTTTTGTTCCT 240
Query 241 GAGAACAAGAACGTCTTCTACTCTAGAAGTGAGTTTATATTTGATCCAGTAAAATGGCCA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGAACAAGAACGTCTTCTACTCTAGAAGTGAGTTTATATTTGATCCAGTAAAATGGCCG 300
Query 301 AGGAGCCAGATGGATAAAGATTTTCAAACTATTGCACAAAAGTTTAGTGCTTTGAGCTCA 360
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGAGGCAGATGGATGAAGATTTTCAAACTATTGCACAAAAGTTTAGTGCTTTGAGCTCA 360
Query 361 GTAGTACGAGTACCCTCTTTAGACCCCAAATACAAGATAGCTCTTTTACTGTCGAAACAG 420
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 GTAGTACGAGTGCCCTCTTTAGACCCCAAATACAAGATAGCTCTTCTACTGTCGAAACAG 420
Query 421 GATCATTGTCTGGTTGAAATGTTACATAAATGGCAGGACGGAAAACTTCCCGTCGATATA 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 421 GATCATTGTCTGGTTGAAATGTTACATAAATGGCAGGATGGAAAACTTCCCGTTGATATA 480
Query 481 ACATGTGTGATAAGTAATCATGAAAGAGCTCCAAACACTCATATTATGCGGTTTCTCCAG 540
|||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 481 ACATGTGTGATAAGTAATCATGAAAGAGCTCCAAACACCCATGTTATGAGGTTTCTCCAG 540
Query 541 AGGCATGGCATCTCATATCATTATTTGCCAACTACCGATCAGAAGAAAATAGAAGAGGAG 600
|||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 541 AGGCATGGCATCTCTTATCATTATTTACCAACAACCGATCAGAATAAAATAGAAGAGGAG 600
Query 601 ATTTTGGAATTGGTTAAGGATACCGATTTTCTAGTTCTCGCTAGATACATGCAGCTACTA 660
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATTTTGGAATTGGTTAAGGGTACCGATTTTCTAGTTCTCGCTAGATACATGCAGCTACTA 660
Query 661 TCCGGTAACTTCTTGAAAGGTTATGGAAAAGATGTAATCAACATCCATCATGGCCTCTTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCCGGTAACTTCTTGAAAGGTTATGGAAAAGATGTAATCAACATCCATCATGGCCTCTTG 720
Query 721 CCATCATTCAAGGGACGAAATCCCGTGAAACAGGCATTTGATGCAGGTGTGAAACTAATT 780
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCATCATTCAAAGGAAGAAATCCCGTGAAACAGGCATTTGATGCAGGTGTGAAACTAATT 780
Query 781 GGTGCAACAACTCACTTTGTTACAGAGGAACTTGATTCAGGTCCTATCATTGAACAAATG 840
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 781 GGTGCAACAACTCACTTTGTTACAGAGGAGCTTGATTCAGGTCCTATCATTGAGCAAATG 840
Query 841 GTTGAGAGAGTTTCCCACCGAGACAATTTGAGAAGCTTTGTCCAGAAATCAGAGGACCTT 900
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 841 GTTGAGAGAGTTTCCCACCGAGACAATTTGAGGAGCTTTGTCCAGAAATCAGAGGACCTT 900
Query 901 GAGAAAAAGTGTCTCATGAAAGCTATCAAATCTTACTGCGAACTGCGAGTATTGCCTTAC 960
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 901 GAGAAAAAGTGTCTCATGAAAGCTATAAAATCTTACTGCGAACTGCGAGTATTGCCTTAT 960
Query 961 GGGACACAAAAGACTGTCGTATTCTAATACGGTCTACATGAAAATCTCTGACATGTCTCT 1020
|||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 961 GGGACACAAAGGACTGTCGTATTCTAATACGGTCTATATGAATATCTCTGACATGTCTCT 1020
Query 1021 CACCTGATTCTTCAAATGAACTTCTCACTCATGCAAAAATATACATACCACTTCTCTACA 1080
||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1021 CACGTGATTCTTCATATGAACTTCTCACTCAAACAAAAATATACATACCACTTCTCTACA 1080
Query 1081 GTTGTTTGACTCTTCATAGAAACTGGATCATTGGAAATAAAAAGTTCAATTGAGATTC 1138
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1081 ATTTTTTGACTCTTCATAGAAACTGAATCATTGGAAATAAAAAGTTCAATTGAGATTC 1138
> AT4G17350.1 | Symbols: | Plant protein of unknown function (DUF828)
with plant pleckstrin homology-like region | chr4:9701132-9703574
FORWARD LENGTH=1884
Length=1884
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 1111 TTGGAAATAAAAAGTTCAATTGAGATTC 1138
||||||||||||||||||||||||||||
Sbjct 1884 TTGGAAATAAAAAGTTCAATTGAGATTC 1857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55823006040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5