BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493143
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17340.1 | Symbols: TIP2;2, DELTA-TIP2 | tonoplast intrinsic... 1509 0.0
AT3G16240.1 | Symbols: DELTA-TIP, TIP2;1, DELTA-TIP1, AQP1, ATT... 276 3e-73
> AT4G17340.1 | Symbols: TIP2;2, DELTA-TIP2 | tonoplast intrinsic
protein 2;2 | chr4:9699253-9700410 FORWARD LENGTH=978
Length=978
Score = 1509 bits (817), Expect = 0.0
Identities = 913/960 (95%), Gaps = 3/960 (0%)
Strand=Plus/Plus
Query 2 AAATAACTTGTAATCAACCAAAGTCGAAAAACAGAGCTATCTTGTCGGATCAAAATGGTG 61
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 12 AAATAACTTGTAATCAACCAAAGTCGAAAAACAGAGTTATTTTGTCGGATCAAAATGGTG 71
Query 62 AAGATTGAGATTGGAAGTTTGGGTGACTCCTTTAGTGTAGCCTCTCTTAAGGCTTACTTG 121
||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 72 AAGATTGAGATAGGAAGTGTGGGTGACTCCTTTAGTGTAGCATCTCTTAAGGCTTACTTG 131
Query 122 TCTGAATTTATTGCAACTCTTCTCTTTGTGTTTGCTGGCGTTGGTTCTGCTCTTGCTTTT 181
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 132 TCTGAATTTATCGCAACTCTTCTCTTTGTGTTTGCTGGCGTTGGCTCTGCTCTTGCTTTT 191
Query 182 GCCAAGCTCACATCCGATGCAGCCTTGGACCCGGCTGGTCTTGTCGCTGTTGCTGTGGCT 241
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 192 GCCAAGCTCACATCCGATGCAGCCTTGGACCCCGCTGGTCTTGTCGCTGTCGCTGTGGCT 251
Query 242 CACGCCTTTGCCCTTTTTGTCGGTGTTTCCATAGCCGCCAACATCTCTGGTGGACACCTT 301
||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||
Sbjct 252 CACGCCTTTGCCCTTTTCGTTGGTGTTTCCATAGCCGCCAACATCTCCGGCGGACACCTT 311
Query 302 AACCCTGCCGTGACACTCGGCCTCGCCATCGGTGGCAACATCACAGTAATAACCGGTTTC 361
||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 312 AACCCCGCCGTGACACTCGGTCTCGCCGTCGGTGGCAACATCACAGTAATAACCGGTTTC 371
Query 362 TTCTACTGGATTGCTCAATGCCTTGGCTCCATCGTCGCTTGTCTCCTCCTCGTCTTCGTG 421
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 372 TTTTACTGGATTGCTCAATGCCTTGGCTCCATCGTCGCGTGTCTCCTCCTCGTCTTCGTT 431
Query 422 ACCAATGGCGAGAGCGTACCGACTCATGGAGTTGCAGCCGGTTTAGGAGCTATTGAAGGA 481
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 432 ACCAATGGCGAGAGCGTACCGACTCATGGAGTAGCGGCCGGTTTAGGAGCTATTGAAGGA 491
Query 482 CTAGTGATGGAGATTGTGGTGACCTTTGCTCTGGTGTACACAGTCTACGCTACAGCGGCT 541
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 492 GTAGTGATGGAGATTGTGGTGACCTTTGCTCTGGTCTACACAGTCTACGCCACAGCGGCT 551
Query 542 GATCCAAAGAAAGGATCACTCGGGACCATAGCTCCGATTGCTATCGGTTTCATCGTTGGT 601
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 552 GATCCAAAGAAAGGTTCACTCGGGACCATTGCTCCAATTGCTATCGGTTTCATCGTTGGT 611
Query 602 GCCAACATCCTCGCCGCCGGTCCCTTTAGCGGTGGTTCGATGAACCCGGCCAGGTCATTT 661
|||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 612 GCCAACATCCTCGCAGCGGGTCCCTTTAGCGGTGGTTCCATGAACCCGGCCAGGTCATTT 671
Query 662 GGACCAGCTGTTGTCAGCGGTGACTTCTCTCAGATATGGATCTACTGGGTGGGCCCACTA 721
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 672 GGACCAGCTGTTGTCAGTGGTGACTTCTCTCAGATATGGATCTACTGGGTGGGTCCACTA 731
Query 722 GTCGGTGGTGCACTCGCCGGACTCATCTACGGCGACGTCTTCATCGGATCCTACGCTCCG 781
|||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 732 GTCGGTGGTGCACTTGCTGGACTCATCTACGGAGACGTCTTCATCGGATCCTACGCTCCA 791
Query 782 GCTCCCACCACAGAAAGCTACCCTTGATCAATCCTATACG-GTTTCAATTTGTTTGGCTT 840
|||||||||||||||||||||||||||||||||||||| | |||| |||||| |||||||
Sbjct 792 GCTCCCACCACAGAAAGCTACCCTTGATCAATCCTATA-GCGTTTTAATTTGCTTGGCTT 850
Query 841 GCTTTTTGTTGTGTGAAAATGTTTGGTCCAAGTTTCTTCCGAAAAGGAATGATTGAATGT 900
|||||||||||| |||||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct 851 GCTTTTTGTTGTATGAAAATGTTTGGTCCTCGTTTCTTCCAAAAATGAATGATTGAATGT 910
Query 901 GGAGAAAAAGATCAAAGTTGTACTTTGTGTTGGTTTAAAAATAAGAATTGTATATTTTCA 960
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 911 GGAGAAAAAGATCAAAGTTGTACTTTGTGTTGGTT-ATAAATAAGAATTGTATATTTTCA 969
> AT3G16240.1 | Symbols: DELTA-TIP, TIP2;1, DELTA-TIP1, AQP1, ATTIP2;1
| delta tonoplast integral protein | chr3:5505404-5507050
FORWARD LENGTH=1145
Length=1145
Score = 276 bits (149), Expect = 3e-73
Identities = 387/500 (77%), Gaps = 24/500 (5%)
Strand=Plus/Plus
Query 278 GCCAACATCTCTGGTGGACACCTTAACCCTGCCGTGACACTCGGCCTCGCCATCGGTGG- 336
||||||||||| ||||| || | ||||| ||||| || | || || || |||||||
Sbjct 353 GCCAACATCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGTCTTGCTGTCGGTGGT 412
Query 337 CAACATCACAGTAATAACCGG-TTTCTTCTACTGGATTGCTCAATGC--CTTGGCTCCAT 393
||| |||||||| || ||||| || ||||||||||| |||| | || || |||||||
Sbjct 413 CAA-ATCACAGTCATCACCGGAGTT-TTCTACTGGATCGCTC-A-GCTTCTCGGCTCCAC 468
Query 394 CGTCGCTTGTCTCCTCCTCGTCTTCGTGACCAATGGCGAGAGC-GTACCGACTCATGGAG 452
|| ||||||| ||||||| | ||| ||| ||| | || || || || || | |
Sbjct 469 CGCCGCTTGTTTCCTCCTTAAATACGTCACCGGTGGATTG-GCGGTTCCAACCCACAGCG 527
Query 453 TTGCAGCCGGTTTAGGAGCTATTGAAGGACTAGTGATGGAGATTGTGGTGACCTTTGCTC 512
|||| || || ||||| | || |||||| ||||||||||||| | | ||||| |||
Sbjct 528 TTGCGGCTGGACTAGGATCGATAGAAGGAGTAGTGATGGAGATCATCATCACCTTCGCTT 587
Query 513 TGGTGTACACAGTCTACGCTACAGCGGCTGATCCAAAGAAAGGATCACTCGGGACCATAG 572
|||| ||||| |||||||| || || |||||||| ||||| || || ||||| ||||| |
Sbjct 588 TGGTCTACACTGTCTACGCCACCGCCGCTGATCCCAAGAAGGGTTCTCTCGGAACCATCG 647
Query 573 CTCCGATTGCTATCGGT-TTCATCGTTGGTGCCAACATCCTCGCCGCCGGTCCCTT-TAG 630
|||| | || || ||| || |||||||||||||||||||||||||||||||| || |
Sbjct 648 CTCCTCTCGCCATTGGTCTT-ATCGTTGGTGCCAACATCCTCGCCGCCGGTCCATTCTC- 705
Query 631 CGGTGGTTCGATGAACCCGGCCAGGT-CATTTGGACCAGCTGTTGTCAGC-GGTGACTTC 688
|||||| || |||||||| || | || | |||||||||||||||| | || || ||||||
Sbjct 706 CGGTGGATCCATGAACCCAGC-ACGTTCCTTTGGACCAGCTGTTG-CTGCCGGAGACTTC 763
Query 689 TCTCAGAT-A-TGGATCTACTGGGTGGGCCCACT-AGTCGGTGGTGCACTCGCCGGACTC 745
||| | | | ||| |||||||||| || ||||| | ||||||||| ||| ||||||||
Sbjct 764 TCTG-G-TCACTGGGTCTACTGGGTTGGACCACTCA-TCGGTGGTGGACTTGCCGGACTT 820
Query 746 ATCTACGGCGACGTCTTCAT 765
|||||||| | ||||||||
Sbjct 821 ATCTACGGAAATGTCTTCAT 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5