BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493145
Length=568
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17310.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 846 0.0
AT5G47455.4 | Symbols: | unknown protein; BEST Arabidopsis tha... 180 2e-44
> AT4G17310.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04
four leaves visible, 4 anthesis, petal differentiation
and expansion stage; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G47455.7); Has 164 Blast hits
to 164 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:9685201-9686928 REVERSE
LENGTH=656
Length=656
Score = 846 bits (458), Expect = 0.0
Identities = 535/571 (94%), Gaps = 10/571 (2%)
Strand=Plus/Plus
Query 1 TCGATCACATGGTCGTGTTTCGTCTTCTC--TGATAATAATGGCTTCTGCTTGTCGTAAG 58
|||||||||| |||||||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 42 TCGATCACATCGTCGTGTTTCTTCTTCTCTTTGATAACAATGGCTTCTGCTTGTCGTAAG 101
Query 59 CTCTTTAACAGAGCTTCCGTCTCTTCCCTCAAATCCGCCCTCAGATCAACCACCGGATCT 118
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 102 CTTTTTAACAGAGCTTCCGTCTCTTCCCTCAAATCTACCCTCAGATCAACCACCGGATCT 161
Query 119 GCACCGGCTGCGTCATCAGCCGGATTTCGTCTTCCTTCTCAACCCTCTCGCCATTTCTCC 178
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 162 ACGTCGGCTGCGTCATCAGCCGGATTTCGTCTTCCTTCTCAACCCACTCGCCATTTCTCC 221
Query 179 TTCTCCAGGTGTCCGTCGGAGCTGGGATGTGTTCAGTCTCTGTTACCGCTGCACAGCACG 238
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 222 TTCTCCAGATGTCCTTCGGAGCTGGGATGTGTTCAGTCGCTGTTACCGCTGCACAGCACG 281
Query 239 GTGGCGGCGGCGAGGCTGACGTCATGTTTAAGCACAACCTCAAGGAGTAGCCGAGCTCTC 298
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 282 GTGGCGGCGGCGAGGCTGACGTCATGTCTAAGCACAACTTCAAGGAGTAGCCGAGCTCTC 341
Query 299 TCTCAGGGTACACTCTGCTGCACCTCTCCCGATCTCTAATGCTTTTCTCTTTACTTTTCT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 TCTCAGGGTACACTCTGCTGCACCTCTCCCGATCTCTAATGCTTTTCTCTTTACTTTTCT 401
Query 359 TGTGAGTTCACTTGGCCTTTCAGTTCCAAGGTGACTCAAAAACCGTCATGAAGGTTAACC 418
| | ||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 402 T---A----ACTTGGCCTTTCAGTTCCAAGGTGACTCAAAAACCCTCATGAAGGTGAACC 454
Query 419 ATGTAATGATGAAAGGGCCAGGATCTCAAAGAGTTGTTTCTTTTCTTTCCTTTGTCAAAC 478
||| ||| ||||||||| ||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 455 ATGGAATTATGAAAGGGGCAGGATCACAAAGAGTTGTTTCTTTTCTTCCCTTTGTCAAAC 514
Query 479 TTAGAGAAAAGAAGTGTCTGTCATTCTTTTTGTGACAAATAAGTATCATTGGTTACA-AA 537
||| ||||||||||||||||||||||||||||||||| |||||||| |||| ||||| ||
Sbjct 515 TTATAGAAAAGAAGTGTCTGTCATTCTTTTTGTGACATATAAGTATTATTGATTACACAA 574
Query 538 TCTCATGTACTTTGATTTATGATGAGAGAAA 568
|||||||||||||||||||||||||||||||
Sbjct 575 TCTCATGTACTTTGATTTATGATGAGAGAAA 605
> AT5G47455.4 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G17310.2);
Has 125 Blast hits to 125 proteins in 13 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:19250723-19252364
FORWARD LENGTH=536
Length=536
Score = 180 bits (97), Expect = 2e-44
Identities = 121/133 (91%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 173 TTCTCCTTCTCCAGGTGTCCGTCGGAGCTGGGATGTGTTCAGTCTCTGTTACCGCTGCAC 232
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 245 TTCTCCTTCTCCAGGTGTCCGTCGGAGCTTGGTTGTGTTCAGTCTCTGTTACCGCTACAC 304
Query 233 AGCACGGTGGCGGCGGCGAGGCTGACGTCATGTTTAAGCACAACCTCAAGGAGTAGCCGA 292
|||||||||||||| ||| || |||||||||| ||||||||||| || || || ||||||
Sbjct 305 AGCACGGTGGCGGCTGCGCGGTTGACGTCATGCTTAAGCACAACTTCCAGAAGCAGCCGA 364
Query 293 GCTCTCTCTCAGG 305
|||||| ||||||
Sbjct 365 GCTCTCACTCAGG 377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27277141821
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5