BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493148
Length=1430
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17270.1 | Symbols: | Mo25 family protein | chr4:9676127-96... 2220 0.0
AT5G47540.1 | Symbols: | Mo25 family protein | chr5:19283029-1... 1092 0.0
AT4G17280.1 | Symbols: | Auxin-responsive family protein | chr... 91.6 2e-17
> AT4G17270.1 | Symbols: | Mo25 family protein | chr4:9676127-9678777
FORWARD LENGTH=1520
Length=1520
Score = 2220 bits (1202), Expect = 0.0
Identities = 1310/1360 (96%), Gaps = 16/1360 (1%)
Strand=Plus/Plus
Query 23 TCT-AAATCTCAAAACGGAGAACGCGAGGGAACAAGAGATTAAAGCATAGTGAGACCCTA 81
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 TCTGAAATCTCAAAACGGAGAACGCGAGGGAACAAGAGATTAAAGCATAGTGAGACCCT- 129
Query 82 agagagagagagagCTTTAGGTCTAGAGAGAATCAATCAC-A--CA-ACATA-AACTAC- 135
| |||||||||||||||||||||||| | ||| |||| | || ||| | ||||||
Sbjct 130 --A-AGAGAGAGAGCTTTAGGTCTAGAGGGGATC-TTCACAATTCACACA-ACAACTACG 184
Query 136 -CATAGGATCGTGCGCGTCAAAAGAAGGTGGTGCTGCTGATTCCAGCCGAAGATTAGTCT 194
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 185 AGATAGGATCGTGCGCGTCAAAAGAAGCTGGTACTGCTGATTCCAGCCGAAGATTAGTCT 244
Query 195 CCGCTTCTGGTTGTTCCGGTGGAGACTCGGCGGACATGAGAGGTCTTTTCAAATCCAAAC 254
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 245 CCGCTTCTGGTTGTTCCGGTGGAGACTCGTCGGAAATGAGAGGTCTTTTCAAATCCAAAC 304
Query 255 CACGGACTCCCGCTGATATTGTTCGACAGACTCGCGATCTCCTCCTCTATGCCGATCGAT 314
| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 305 CGCGGACTCCCGCTGATATTGTTCGTCAGACTCGCGATCTCCTCCTCTACGCCGATCGAT 364
Query 315 CCAACTCTTTCCCTGACCTTCGAGAGTCCAAACGCGAGGAAAAGCTGGTGGAACTAAGCA 374
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 365 CCAACTCCTTCCCTGACCTTCGAGAGTCCAAACGCGAGGAAAAGATGGTGGAACTAAGTA 424
Query 375 AGAGCATACGAGATTTGAAGTTAATTCTCTATGGAAACAGTGAGGCTGAGCCTGTTTCTG 434
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 425 AGAGCATACGAGATTTGAAGTTGATTCTATATGGAAACAGTGAGGCTGAGCCTGTTGCTG 484
Query 435 AAGCTTGTGCTCAGTTGACTCAGGAGTTCTTTAAGGCTGATACTCTTCGCCGCTTGCTCA 494
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 485 AAGCTTGTGCTCAGTTGACTCAGGAGTTCTTTAAGGCTGATACTCTTCGCCGTTTGCTCA 544
Query 495 CTTCTCTTCCTAATTTGAACTTGGAGGCCAGGAAAGATGCTACACAAGTTGTTGCAAATC 554
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 545 CTTCTCTTCCTAATTTGAACTTGGAGGCGAGGAAAGATGCTACACAAGTTGTTGCAAATC 604
Query 555 TTCAGAGGCAACAAGTCAATTCACGTCTTATTGCTGCTGATTATCTTGAATCCAACATTG 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 TTCAGAGGCAACAAGTCAATTCACGTCTTATTGCTGCTGATTATCTTGAATCCAACATTG 664
Query 615 ATCTTATGGATTTTCTAGTCGATGGGTTCGAAAACACTGATATGGCGTTACACTATGGTA 674
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 665 ATCTTATGGATTTTCTAGTTGATGGGTTTGAAAACACCGATATGGCGTTACACTATGGTA 724
Query 675 CTATGTTTAGAGAGTGCATCCGCCATCAGATTGTTGCAAAATATGTTTTGGACTCTCAGC 734
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 725 CTATGTTTAGAGAGTGCATCCGTCATCAGATTGTTGCAAAATATGTTTTGGACTCGGAGC 784
Query 735 ACGTGAAGAAGtttttttACTACATACAGCTTCCCAATTTCGACATTGCTGCTGATGCTG 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 ACGTGAAGAAGTTTTTTTACTACATACAGCTTCCCAATTTCGACATTGCTGCTGATGCTG 844
Query 795 CTGCAACTTTTAAGGAACTTCTGACAAGGCACAAGTCTACAGTTGCTGAGTTTCTCATTA 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 CTGCAACTTTTAAGGAACTTCTGACAAGGCACAAGTCTACAGTTGCTGAGTTTCTCATTA 904
Query 855 AGAATGAAGACTGGtttttttCAGACTACAACTCAAAGCTTCTTGAATCAACTAATTATA 914
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 905 AGAATGAAGACTGGTTTTTTGCAGACTACAACTCAAAGCTTCTTGAATCAACTAATTATA 964
Query 915 TTACCAGACGGCAAGCTATTAAGTTGTTGGGTGATATATTATTGGATCGGTCAAATTCGG 974
||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 965 TTACCCGACGGCAAGCTATTAAGTTGTTGGGCGATATATTATTGGATAGGTCAAATTCGG 1024
Query 975 CTGTGATGACGAAGTATGTGAGCTCGATGGATAACTTGAGGATTCTGATGAATCTTCTCA 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 CTGTGATGACGAAGTATGTGAGCTCGATGGATAACTTGAGGATTCTGATGAATCTTCTCA 1084
Query 1035 GAGAATCAAGCAAGACTATTCAGATAGAAGCTTTCCATGTTTTCAAGCTGTTTGTAGCGA 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 GAGAATCAAGCAAGACTATTCAGATAGAAGCTTTCCATGTTTTCAAGCTGTTTGTAGCGA 1144
Query 1095 ACCAAAACAAGCCTTCAGACATCGCCAACATTCTGGTGGCAAACAGAAACAAGCTTCTGA 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 ACCAAAACAAGCCTTCAGACATCGCCAACATTCTGGTGGCAAACAGAAACAAGCTTCTGA 1204
Query 1155 GATTGTTGGCTGATATCAAGCTGGACAAAGAGGACGAGAGGTTTGAAGCAGACAAAGCTC 1214
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1205 GATTGTTGGCTGATATCAAGCCGGACAAAGAGGACGAGAGGTTTGACGCAGACAAAGCTC 1264
Query 1215 AGGTTGTGAGAGAGATTGCAAGCCTTAAGCTGCGAGAGCTTGCTTGAGCATGCACATATA 1274
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1265 AGGTTGTGAGAGAGATTGCAAACCTTAAGCTGCGAGAGCTTGCTTGAGCATGCACATATA 1324
Query 1275 CACAGAAGCTCATGCTTTCTGTTTAATCTTTGAAAGACATTTTTGGACCATCAAAGATTG 1334
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1325 CACAGAAGCTCATGATTTCTGTT-AATCTTTGAAAGACATTTTTGGACCATCAAAGATTG 1383
Query 1335 TTGTTATTTATTAGGTACTGTTTCTCTT-TCTCTCTCAGC 1373
||||||||||||||||||||||||| || |||||||||||
Sbjct 1384 TTGTTATTTATTAGGTACTGTTTCTTTTCTCTCTCTCAGC 1423
> AT5G47540.1 | Symbols: | Mo25 family protein | chr5:19283029-19285698
REVERSE LENGTH=1638
Length=1638
Score = 1092 bits (591), Expect = 0.0
Identities = 895/1042 (86%), Gaps = 20/1042 (2%)
Strand=Plus/Plus
Query 230 ATGAGAGGTCTTTTCAAATCCAAACCACGGACTCCCGCTGATATTGTTCGACAGACTCGC 289
|||| ||| |||||||| || || ||||| ||||| ||||| |||||||||| || |||
Sbjct 371 ATGAAAGGGCTTTTCAAGTCTAAGCCACGCACTCCTGCTGACCTTGTTCGACAAACCCGC 430
Query 290 GATCTCCTCCTC-TATGCCGATCGATCCAACTCTTTCCCTGACCTTCGAGAGTCCAAACG 348
|||||||| ||| | | |||||||||| | |||||| |||||||| ||||| ||||||||
Sbjct 431 GATCTCCTTCTCTTCT-CCGATCGATCTACCTCTTTGCCTGACCTCCGAGATTCCAAACG 489
Query 349 CGAGGAAAAGCTGGTGGAACTAAGCAAGAGCATACGAGATTTGAAGTTAATTCTCTATGG 408
||| |||||| ||| |||| ||||| || || || || |||||| |||||||| ||
Sbjct 490 CGACGAAAAGATGGCGGAATTAAGCCGGAATATCCGTGACATGAAGTCGATTCTCTACGG 549
Query 409 AAACAGTGAGGCTGAGCCTGTTTCTGAAGCTTGTGCTCAGTTGACTCAGGAGTTCTTTAA 468
||||| || || |||||||| | ||||||||||| ||||||||||| || ||||||||
Sbjct 550 GAACAGCGAAGCAGAGCCTGTGGCAGAAGCTTGTGCACAGTTGACTCAAGAATTCTTTAA 609
Query 469 GGCTGATACTCTTCGCCGCTTGCTCACTTCTCTTCCT-AATTTGAACTTGGAGGCCAGGA 527
| |||||||| || | |||| | |||| ||| ||| || || ||||||||| | ||||
Sbjct 610 AGAGGATACTCTACGTCTCTTGATTACTTGTCTCCCTAAACTT-AACTTGGAGACGAGGA 668
Query 528 AAGATGCTACACAAGTTGTTGCAAATCTTCAGAGGCAACAAGTCAATTCAC-GTCTTATT 586
|||||||||||||||||||||||||||| ||||||||||| || ||||||| || | |||
Sbjct 669 AAGATGCTACACAAGTTGTTGCAAATCTACAGAGGCAACAGGTTAATTCACGGT-TGATT 727
Query 587 GCTGCTGATTATCTT-GAATCCAACATTGATCTTATGGAT-TTTCTAG-TCGATGGGTTC 643
||| |||||||| || ||| ||||||||||||| |||||| ||| | | | || || |||
Sbjct 728 GCTTCTGATTAT-TTAGAAGCCAACATTGATCTCATGGATGTTT-T-GATTGAAGGCTTC 784
Query 644 GAAAACACTGATATGGCGTTACACTATGGTACTATGTTTAGAGAGTGCATCCGCCATCAG 703
|| ||||| || ||||| |||||||||||| |||||||||| ||||| ||||| ||||||
Sbjct 785 GAGAACACAGACATGGCTTTACACTATGGTGCTATGTTTAGGGAGTGTATCCGTCATCAG 844
Query 704 ATTGTTGCAAAATATGTTTTGGACTCTCAGCACGTGAAGAAGtttttttACTACATACAG 763
||||| || |||||||||||||| ||| | || |||||||| || ||| | |||||||||
Sbjct 845 ATTGTGGCTAAATATGTTTTGGAGTCTGACCATGTGAAGAAATTCTTTGATTACATACAG 904
Query 764 CTTCCCAATTTCGACATTGCTGCTGATGCTGCTGCAACTTTTAAGGAACTTCTGACAAGG 823
||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 905 CTTCCAAATTTCGACATTGCTGCCGATGCTGCTGCTACTTTTAAGGAACTGCTGACAAGG 964
Query 824 CACAAGTCTACAGTTGCTGAGTTTCTCATTAAGAATGAAGACTGGtttttttCAGACTAC 883
|| |||||||| ||||| |||||||||| |||||||||||||||||||| ||||||||
Sbjct 965 CATAAGTCTACTGTTGCCGAGTTTCTCACCAAGAATGAAGACTGGTTTTTCGCAGACTAC 1024
Query 884 AACTCAAAGCTTCTTGAATCAACTAATTATATTACCAGACGGCAAGCTATTAAGTTGTTG 943
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1025 AACTCAAAGCTTCTTGAATCAAGTAATTATATAACCAGACGGCAAGCTATTAAGTTGTTG 1084
Query 944 GGTGATATATTATTGGATCGGTCAAATTCGGCTGTGATGACGAAGTATGTGAGCTCGATG 1003
|||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| |
Sbjct 1085 GGTGATATATTATTGGATCGATCAAATTCAGCTGTGATGACGAAATATGTGAGCTCGAGG 1144
Query 1004 GATAACTTGAGGATTCTGATGAATCTTCTCAGAGAATCAAGCAAGACTATTCAGATAGAA 1063
||||||||||||||||| ||||||||||| ||||| |||||||||| ||| || ||||||
Sbjct 1145 GATAACTTGAGGATTCTCATGAATCTTCTAAGAGAGTCAAGCAAGAGTATCCAAATAGAA 1204
Query 1064 GCTTTCCATGT-TTTCAAGCTGTTTGTAGCGAACCAAAACAAGCCTTCAGACATCGCCAA 1122
|| |||||||| ||| |||||||||| ||||||||||||||||||| | || || | |||
Sbjct 1205 GCATTCCATGTCTTT-AAGCTGTTTGCAGCGAACCAAAACAAGCCTGCGGATATAGTCAA 1263
Query 1123 CATTCTGGTGGCAAACAGAAACAAGCTTCTGAGATTGTTGGCTGATATCAAGCTGGACAA 1182
|||||||||||| ||||||| ||||||||||||||||||||||||| | || | |||||
Sbjct 1264 CATTCTGGTGGCCAACAGAAGCAAGCTTCTGAGATTGTTGGCTGATTTGAAACCAGACAA 1323
Query 1183 AGAGGACGAGAGGTTTGAAGCAGACAAA-GCTCAGGTTGTGAGAGAGATTGCAAGCC-TT 1240
|||||| ||||||||||||||||||||| | ||||||| ||||||| || ||| ||| ||
Sbjct 1324 AGAGGATGAGAGGTTTGAAGCAGACAAAAG-TCAGGTTTTGAGAGAAATCGCA-GCCCTT 1381
Query 1241 -AAGCTGCGAGAGCTTGCTTGA 1261
|| || ||||| |||||||||
Sbjct 1382 GAACCT-CGAGATCTTGCTTGA 1402
> AT4G17280.1 | Symbols: | Auxin-responsive family protein | chr4:9678625-9680389
REVERSE LENGTH=1583
Length=1583
Score = 91.6 bits (49), Expect = 2e-17
Identities = 54/56 (96%), Gaps = 1/56 (2%)
Strand=Plus/Minus
Query 1319 GGACCATCAAAGATTGTTGTTATTTATTAGGTACTGTTTCTCTT-TCTCTCTCAGC 1373
||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1583 GGACCATCAAAGATTGTTGTTATTTATTAGGTACTGTTTCTTTTCTCTCTCTCAGC 1528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70481565180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5