BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493153
Length=2004
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17230.1 | Symbols: SCL13 | SCARECROW-like 13 | chr4:9660985... 3048 0.0
> AT4G17230.1 | Symbols: SCL13 | SCARECROW-like 13 | chr4:9660985-9663774
REVERSE LENGTH=2026
Length=2026
Score = 3048 bits (1650), Expect = 0.0
Identities = 1877/1985 (95%), Gaps = 21/1985 (1%)
Strand=Plus/Plus
Query 1 CAAGCTGATTCTTGAGTATGCAACGAAAACTTCTCTTTTGTCCCCTT-CCAAAC-AAAAT 58
||||||||||||||||||||||| ||||||||||||||||||||||| | ||| |||||
Sbjct 1 CAAGCTGATTCTTGAGTATGCAAGGAAAACTTCTCTTTTGTCCCCTTGTC-AACAAAAAT 59
Query 59 CTCCCAATCAACAAAATTTCTTCAAAAGGT-TAGCTT-AGACAGGTTTTTGTTCTCCTTG 116
|||||| ||||||||||||||||| | | ||| | | |||||||| |||||||||
Sbjct 60 CTCCCATTCAACAAAATTTCTTCAGCTTCTCT-CCTTCA-AAAGGTTTTTATTCTCCTTG 117
Query 117 GTTTGAGCAAGTTACACTGTAGAGAGTGATTTGGCTAAAAGAAGATTGATTCCGGAGGTG 176
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 118 GTTTGAACAAGTTACACTGTAGAGAGTGATTTGGCTAAAAGAAGATTGATTCAGGAGCTG 177
Query 177 TATAGTGTATTGCT-GGGTTTTTCCAATGCAAACGTCTCAGAAACATCACAGTGCGGCTG 235
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TGTAGTGTATTGCTGGGGTTTTTCCAATGCAAACGTCTCAGAAACATCACAGTGCGGCTG 237
Query 236 GACTGCACATGCTGTATCCTCAAGTCTACTGTTCGCCTCAGTTTCAAGCGAAAGACAACA 295
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 238 GACTGCACATGCTGTATCCTCAAGTCTACTGTTCACCTCAGTTTCAAGCGAAAGACAACA 297
Query 296 ATGGCTTCTCTGATATCCCATCCAAAGAAAACTTTTTTACTCTCGAATCCTCCACTGCTT 355
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 298 AAGGCTTCTCTGATATCCCGTCCAAAGAAAACTTTTTTACCCTCGAATCCTCCACTGCTT 357
Query 356 CTGGTAGTCTTCCTTCGTATGACTCTCCTTCTGTGAGCATCACATCTGGCCGGAGCCCGT 415
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 358 CTGGTAGTCTTCCTTCGTATGACTCTCCTTCTGTGAGCATTACATCTGGCCGGAGCCCGT 417
Query 416 TTTCTCCTCAGGGCTCTCAATCATGCATCTCGGATCTCCATCTTTCCCCTGACAACGTCT 475
||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 418 TTTCTCCTCAGGGCTCTCAGTCTTGCATCTCGGATCTCCATCATTCCCCTGACAACGTCT 477
Query 476 ATGGATCACCCTTGAGTGGGGTGTCTTCTTTTGCCTATGATGAAGCTGGGGTCAAGAGTA 535
|||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||
Sbjct 478 ATGGATCACCTTTGAGTGGGGTGTCATCTCTTGCCTATGATGAAGCTGGAGTCAAGAGTA 537
Query 536 AGATTCGGGAACTTGAGGTCTCGCTGCTGAGTGGTGATACAAAAGTTGAAGAATTCTCTG 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 538 AGATTCGGGAACTTGAGGTCTCGCTGCTGAGTGGTGATACAAAAGTTGAAGAATTCTCAG 597
Query 596 GTTTCAGCCCTGCTGTTGGGAAGTCGTGGAACTGGGATGAACTCTTGGCTTTGACTCCGC 655
|||| ||||| |||| ||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 598 GTTTTAGCCCCGCTGCTGGGAAGTCGTGGAACTGGGATGAACTTTTGGCTTTGACTCCAC 657
Query 656 AGTTGGACTTGAAAGAGGTGCTGGTGGAGGCCGCTCGGGCAGTCGCTGATGGGGATTTTG 715
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 658 AGTTGGACTTGAAAGAGGTGCTGGTGGAGGCTGCTCGGGCAGTCGCTGATGGGGATTTCG 717
Query 716 CTACAGCGTATGGATTCCTCGATGTCTTGGAACAGATGGTGTCGGTCTCAGGCAGTCCGA 775
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 718 CTACAGCGTATGGATTCCTTGATGTCTTGGAACAGATGGTGTCAGTCTCAGGCAGTCCGA 777
Query 776 TCCAACGGCTAGGCACTTACATGGCAGAAGGGCTTAGAGCAAGGCTTGAGGGGTCTGGGA 835
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 778 TCCAACGGCTAGGCACTTACATGGCAGAAGGGCTTAGAGCGAGGCTTGAGGGGTCTGGGA 837
Query 836 GCAATATATACAAAGCCTTGAAATGCAATGAACCAACGGGAAGGGAACTGATGTCTTACA 895
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GCAATATATACAAATCCTTGAAATGCAATGAACCAACGGGAAGGGAACTGATGTCTTACA 897
Query 896 TGAGTGTTCTCTATGAAATCTGCCCCTACTGGAAATTCGCGTACACAACAGCAAATGCTG 955
||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 898 TGAGTGTTCTCTATGAAATCTGCCCCTACTGGAAATTCGCGTACACAACTGCGAATGTTG 957
Query 956 CGATCTTGGAAGCAATAGCTGGGGAAACCAGAGTCCACATTATCGATTTTCAGATTGCGC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 958 AGATCTTGGAAGCAATAGCTGGGGAAACCAGAGTCCACATTATCGATTTTCAGATTGCAC 1017
Query 1016 AGGGATCACAATACATGTTTTTGATCCAGGAGCTTGCGAAACGCCCTGGTGGGCCGCCGT 1075
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1018 AGGGATCACAATACATGTTTTTGATTCAGGAGCTTGCGAAACGCCCTGGTGGGCCGCCGT 1077
Query 1076 TTCTGCGTGTGACGGGTGTGGACGATTCACAGTCCACCTATGCTCGTGGGGGAGGGCTCA 1135
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1078 TGCTGCGTGTGACGGGTGTGGATGATTCACAGTCCACCTATGCTCGTGGGGGAGGACTCA 1137
Query 1136 GCCTTG-TAGGTGAGAGGCTCGCAAAGTTGGCGCAGTCATGTGGTGTCCCGTTTGAGTTT 1194
|| ||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1138 GC-TTGGTAGGTGAGAGGCTTGCAACTTTGGCGCAGTCATGTGGTGTCCCGTTTGAGTTT 1196
Query 1195 CACGATGCTATCATGTCTGGGTGCAAGGTGCAGCGGGAACACCTCGGGGTGGAACCTGGC 1254
|||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1197 CACGATGCCATCATGTCTGGGTGCAAGGTGCAGCGGGAACATCTCGGGTTGGAACCTGGC 1256
Query 1255 TTTGCTGTTGTTGTGAACTTCCCATATGTGTTACACCACATGCCTGACGAGAGCGTAAGT 1314
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1257 TTTGCTGTTGTTGTGAACTTCCCATATGTATTACACCACATGCCAGACGAGAGCGTAAGT 1316
Query 1315 GTTGAAAATCACAGAGACAGGCTGCTGCATCTGATCAAGAGCCTCTCCCCAAAACTCGTT 1374
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1317 GTTGAAAATCACAGAGACAGGCTGCTGCATCTGATCAAGAGCCTCTCCCCAAAACTGGTT 1376
Query 1375 ACTCTAGTGGAGCAAGAATCAAACACAAACACCTCGCCTTTCCTGTCACGGTTTGTGGAG 1434
|||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1377 ACTCTAGTAGAGCAAGAATCCAACACAAACACCTCGCCATTCCTGTCACGGTTTGTGGAA 1436
Query 1435 ACACTGGATTACTACACAGCGATGTTTGAGTCGATAGATGTAGCGCGGCCACGGGATGAT 1494
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1437 ACACTGGATTACTACACAGCGATGTTTGAGTCGATAGATGCAGCACGGCCACGGGATGAT 1496
Query 1495 AAGCAGAGAATCAGCGCAGAACAACACTGCGTAGCAAGAGACATAGTGAACATGATAGCG 1554
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1497 AAGCAGAGAATCAGCGCAGAACAACACTGTGTAGCAAGAGACATAGTGAACATGATAGCA 1556
Query 1555 TGCGAGGATTCAGAGAGAGTAGAGAGACACGAGGTGCTGGGGAAATGGAGGGTGAGAATG 1614
|| ||||| |||||||||||||||||||||||||| ||||||| ||||||||| ||||||
Sbjct 1557 TGTGAGGAGTCAGAGAGAGTAGAGAGACACGAGGTACTGGGGATATGGAGGGTCAGAATG 1616
Query 1615 ATGATGGCTGGGTTCACGGGCTGGCCAGTCAGCACATCCGCAGCGTTTGCAGCAAGTGAG 1674
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||
Sbjct 1617 ATGATGGCTGGGTTCACGGGTTGGCCGGTCAGCACATCTGCAGCGTTTGCAGCGAGTGAG 1676
Query 1675 ATGCTGAAAGGTTATGACAAAAACTACAAACTGGGAGGGAATGAAGGAGCGCTATATCTC 1734
|||||||||| ||||||||||||||||||||||||||| ||||||||||||| || |||
Sbjct 1677 ATGCTGAAAGCTTATGACAAAAACTACAAACTGGGAGGCCATGAAGGAGCGCTCTACCTC 1736
Query 1735 TTCTGGAAGAGACGACCCATGGCTACATGTTCCACGTGGAAGCCAAACCCAAACCCAAAC 1794
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1737 TTCTGGAAGAGACGACCCATGGCTACATGTTCCGTGTGGAAGCCAAACCCAAACT-A--- 1792
Query 1795 CAGATTGGGTAAATTATAGTGATGATGGTGACTTGAGTGGAT---GAAGAGCACAACAAA 1851
|||||||||| |||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1793 --GATTGGGTAAGTTATAGTGATGATGGTTACTTGAGTGGATAAAGAAGAGCACAACAAA 1850
Query 1852 AACACATCTGTCGCTGTAAATTTTTGAGGATGTGCAATGATGTTT-AAGTTGTAATACAA 1910
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||
Sbjct 1851 AACACATCTGTCGCTGTAAATTTTTTAGGATGTGCAATGATGTTTTAAGTTGTAACACAA 1910
Query 1911 CCTAAGTTATATATGTATACAAACCAAACCTGGTGGTTGTTTTTTCTCTTGTAAATTTTC 1970
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1911 CCTAAGTTATATATGTATACAAACCAAACCTGGTGGTTGTTTTT-CTCTTGTAAATTGTC 1969
Query 1971 ATGTG 1975
|||||
Sbjct 1970 ATGTG 1974
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1976 TGAAATATAACCAAAACATTGATTAGGTC 2004
|||||||||||||||||||||||||||||
Sbjct 1997 TGAAATATAACCAAAACATTGATTAGGTC 2025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99296678010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5