BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493155
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17215.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 935 0.0
> AT4G17215.1 | Symbols: | Pollen Ole e 1 allergen and extensin
family protein | chr4:9655837-9656577 FORWARD LENGTH=652
Length=652
Score = 935 bits (506), Expect = 0.0
Identities = 585/623 (94%), Gaps = 6/623 (1%)
Strand=Plus/Plus
Query 1 ACCTTGAAGATTAAAGATGAGGTTCTTGTTGATGAGCATGACTTTGGTATTAATGGTGAC 60
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 32 ACCTTGAAGATTAAAGATGAGGTTCTTGTTGATGAGCATGACGTTGGTATTAATTGTGAC 91
Query 61 GTTTGGGGAAGCAGTTAGGGATAGATGGAGCAGAGATGAGATGGTGGAGATGGCTGGCTA 120
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 92 GTTTGGGGAAGCATTTAGTGATAGATGGAGCAGAGATGAGATGGTGGAGATGGCTGGCTA 151
Query 121 CGGCGAAGAAAAActctcctctgttcttctcaccgcctctcttctctcttcctcttcctc 180
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 152 CGGCGAACAAAAACTCTCCTCTGTTCTTCTCACCGCCTCTCTTCTCTCTTCCTCCTCCTC 211
Query 181 cCCTATTCATGGTGCTACCATTGGCATCAAGTGCCATATTGGATATAGGAGAAGATCTAA 240
|||||||||||| ||||| |||||| |||||||||||| |||| ||||||| ||||||||
Sbjct 212 CCCTATTCATGGAGCTACTATTGGCTTCAAGTGCCATACTGGACATAGGAGGAGATCTAA 271
Query 241 ATGGATCAAAGCTGTTACAAATGAGTTGGGGCAATTCGTCATCGATCTTCCTTCTCACCT 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 ATGGATCAAAGCTGTGACAAATGAGTTGGGGCAATTCGTCATCGATCTTCCTTCTCACCT 331
Query 301 CCACGCGATTCCTGACTTGGACAAGGCTTGTATCATTAAACCACTCTCTGTTCCTAAACC 360
|||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||
Sbjct 332 CCACGCGATTCCTGACTTAGACAAGGCTTGTATCATTAAAACACTCTCTGTCCCTAAACC 391
Query 361 ATATCGATGCTCATCCAAGATTCATAGAGGAATTCAACTCCTCTCCTCTTCTAACGGCTC 420
||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 392 GTATCGATGCTCTTCCAAGATTCACAGAGGTATTCAACTCCTCTCCTCTTCCAACGGCTC 451
Query 421 CCGTGTCTACACAGCCGGCAACATCACCTTACAAGAGAGCACCATGCAAAAAGAGATTGT 480
|||||||| ||||| || || |||||||||||||||||||||||| |||| |||| |||
Sbjct 452 TCGTGTCTATACAGCTGGAAATATCACCTTACAAGAGAGCACCATGTAAAA-GAGACTGT 510
Query 481 AAATTAATCTTGCTAGGAAAGATCAGTCATGACTTTATTTGTATATGGTTCCTTCTCACT 540
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 511 AAATTAATCTTGCTAGGAAAGATCAGTCCTGACTTTATTTCTATATGGTTCCTTCTCACT 570
Query 541 TCTTGTGAGAAAGAGAGACAAGTCTTTGTAAATCTTGTTGTTCATGCTCTTCTTGTATAT 600
|||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||
Sbjct 571 TCTTGTGAGAAAGAGAGATA-GTCTTTGTAAATCTTGTTCTTCATGCTCTTCTTGTATAT 629
Query 601 A-TAAAATTTTAT-TTTTGCTTC 621
| |||||||| || |||| ||||
Sbjct 630 AATAAAATTT-ATGTTTT-CTTC 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5