BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493155 Length=621 Score E Sequences producing significant alignments: (Bits) Value AT4G17215.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 935 0.0 > AT4G17215.1 | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr4:9655837-9656577 FORWARD LENGTH=652 Length=652 Score = 935 bits (506), Expect = 0.0 Identities = 585/623 (94%), Gaps = 6/623 (1%) Strand=Plus/Plus Query 1 ACCTTGAAGATTAAAGATGAGGTTCTTGTTGATGAGCATGACTTTGGTATTAATGGTGAC 60 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 32 ACCTTGAAGATTAAAGATGAGGTTCTTGTTGATGAGCATGACGTTGGTATTAATTGTGAC 91 Query 61 GTTTGGGGAAGCAGTTAGGGATAGATGGAGCAGAGATGAGATGGTGGAGATGGCTGGCTA 120 ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 92 GTTTGGGGAAGCATTTAGTGATAGATGGAGCAGAGATGAGATGGTGGAGATGGCTGGCTA 151 Query 121 CGGCGAAGAAAAActctcctctgttcttctcaccgcctctcttctctcttcctcttcctc 180 ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 152 CGGCGAACAAAAACTCTCCTCTGTTCTTCTCACCGCCTCTCTTCTCTCTTCCTCCTCCTC 211 Query 181 cCCTATTCATGGTGCTACCATTGGCATCAAGTGCCATATTGGATATAGGAGAAGATCTAA 240 |||||||||||| ||||| |||||| |||||||||||| |||| ||||||| |||||||| Sbjct 212 CCCTATTCATGGAGCTACTATTGGCTTCAAGTGCCATACTGGACATAGGAGGAGATCTAA 271 Query 241 ATGGATCAAAGCTGTTACAAATGAGTTGGGGCAATTCGTCATCGATCTTCCTTCTCACCT 300 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 272 ATGGATCAAAGCTGTGACAAATGAGTTGGGGCAATTCGTCATCGATCTTCCTTCTCACCT 331 Query 301 CCACGCGATTCCTGACTTGGACAAGGCTTGTATCATTAAACCACTCTCTGTTCCTAAACC 360 |||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| Sbjct 332 CCACGCGATTCCTGACTTAGACAAGGCTTGTATCATTAAAACACTCTCTGTCCCTAAACC 391 Query 361 ATATCGATGCTCATCCAAGATTCATAGAGGAATTCAACTCCTCTCCTCTTCTAACGGCTC 420 ||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||| Sbjct 392 GTATCGATGCTCTTCCAAGATTCACAGAGGTATTCAACTCCTCTCCTCTTCCAACGGCTC 451 Query 421 CCGTGTCTACACAGCCGGCAACATCACCTTACAAGAGAGCACCATGCAAAAAGAGATTGT 480 |||||||| ||||| || || |||||||||||||||||||||||| |||| |||| ||| Sbjct 452 TCGTGTCTATACAGCTGGAAATATCACCTTACAAGAGAGCACCATGTAAAA-GAGACTGT 510 Query 481 AAATTAATCTTGCTAGGAAAGATCAGTCATGACTTTATTTGTATATGGTTCCTTCTCACT 540 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 511 AAATTAATCTTGCTAGGAAAGATCAGTCCTGACTTTATTTCTATATGGTTCCTTCTCACT 570 Query 541 TCTTGTGAGAAAGAGAGACAAGTCTTTGTAAATCTTGTTGTTCATGCTCTTCTTGTATAT 600 |||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||| Sbjct 571 TCTTGTGAGAAAGAGAGATA-GTCTTTGTAAATCTTGTTCTTCATGCTCTTCTTGTATAT 629 Query 601 A-TAAAATTTTAT-TTTTGCTTC 621 | |||||||| || |||| |||| Sbjct 630 AATAAAATTT-ATGTTTT-CTTC 650 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29939551612 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5