BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493156
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17210.1 | Symbols: | Plant protein of unknown function (DU... 2412 0.0
> AT4G17210.1 | Symbols: | Plant protein of unknown function (DUF827)
| chr4:9652585-9654257 REVERSE LENGTH=1584
Length=1584
Score = 2412 bits (1306), Expect = 0.0
Identities = 1494/1586 (94%), Gaps = 7/1586 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAAGATCCGAACGGATGCTCCGGTGATACCTCCGGAGACTCCTCCTAGGAGCAGT 60
|||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1 ATGGCGAAGATCAGAACGGATGCTCCGGTGATGCCTCCGGAGACTCCTCCTCGGAGCAGT 60
Query 61 GAGGTGGGAGAGATTGACACGCGCGCTCCCTTCCAATCCGTTAGAGACGCCGTTAGTTTA 120
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 61 GAGGTGGGAGAGATTGACACCCGCGCTCCCTTCCAATCCGTTAGAGACGCCCTTAGTTTA 120
Query 121 TTCCGTCAAGTTAGCTTTTCCAAGAAGCAACCA-C-CG-CATCT-CTCCTCCTCCTCTTC 176
||||||||||||||||||||||||||||||||| | || | ||| |||||||||||||||
Sbjct 121 TTCCGTCAAGTTAGCTTTTCCAAGAAGCAACCACCTCGTC-TCTCCTCCTCCTCCTCTTC 179
Query 177 TCAGTCTCA-GTCTACAAAAACGGATGTGTCCGATAAGGAGATGCAACTTCTGTTGGCCG 235
||||||||| | | |||| |||||||||||| ||||||||||||||||||||||| ||||
Sbjct 180 TCAGTCTCAGGAC-ACAACAACGGATGTGTCGGATAAGGAGATGCAACTTCTGTTAGCCG 238
Query 236 AACAAGAAATGGATAGAGTCAAGCTGTGTCTTGATGGCTCTGTCGCAGCTAAAGCACAAG 295
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 239 AACAAGAAATGGATAGAGTCAAGATATGTCTTGATGGCTCTGTCGCAGCTAAAGCACAAG 298
Query 296 CTCTCTCTGATCTCGACTCTGCTCAACGAAAGGCCGCTGATTTAAGGGTTAAACTAGAAT 355
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 299 CTCTCTCTGATCTCGACTCTGCTCAACGAAAGGCTGCTGATTTAAGGGTTAAACTAGAAT 358
Query 356 CCATCAAACATTCCAGGAAATGTGCTATCTCTACCAAACACACCATGAATCAACGTTTAG 415
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 CCATCAAACATTCAAGGAAATGTGCTATCTCTACCAAACACACCATGAATCAACGGTTAG 418
Query 416 AACAACTTCAATCTGAAAACCAAGAAACAGAGAGCGCAAGAGAAGATTACATTTTAATTA 475
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct 419 AACAACTTCAATCTGAAAACCAAGAAACAGAGAGCACAAGAGAGGATTACATTTTGATTA 478
Query 476 CCGCGGAGCTGTTCATGGCGAAAAACGAGCTCGCGGAATTGAAACAACAGTTTAACCTCT 535
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 479 CCGCGGAGCTGTTCATGGCGAAATACGAGCTCGCGGAATTAAAACAACAGTTTAACCTCT 538
Query 536 CCGTGGAAGAAAGGCTAGCTGAACTTCAAAGGGCAGAGGAAGCAGAGTGTGCGTCTATGG 595
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 CCGTGGAAGAGAGACTAGCTGAACTTCAGAGGGCAGAGGAAGCAGAGTGTGCGTCTATGG 598
Query 596 TTAACTCCAACAAGATCAAAGACATGTCACATGAGATAGCGGAAATGCGTGATGCTGCTG 655
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 599 TTAACTCCAACAAGATCAAAGACATGTCGCATGACATAGCGGAAATGCGTGATGCTGCTG 658
Query 656 AGCGGCTGAAGTCTGATGCTGTTAGGAAAAAGGAGGAAGAGGAAAAGATAAAGGAAGAGA 715
|||| || || |||||||||| |||||||| |||||||||||| |||||||||||||||
Sbjct 659 AGCGACTTAATTCTGATGCTGCAAGGAAAAAAGAGGAAGAGGAACAGATAAAGGAAGAGA 718
Query 716 GTATTGCCGCGAGAGAAACTTACGTGTCTAAGAAACAAGAAGCTAAGAAAAGGCTGGAGG 775
|||||||| ||||||||||||||||| |||||| | |||||||||| ||||||||||||
Sbjct 719 GTATTGCCTTGAGAGAAACTTACGTGTGTAAGAAGCTAGAAGCTAAGCAAAGGCTGGAGG 778
Query 776 ATGTGAAGCAAGATTGTGACCCTGAGCTAAGGAAAGATATCGAGGAGCTAGCGGATATAT 835
|| | |||| |||||||||||||||||||| ||||||||| |||||| || ||| ||||
Sbjct 779 ATCTCAAGCGAGATTGTGACCCTGAGCTAAAGAAAGATATTGAGGAGTTAATGGAGATAT 838
Query 836 CTGCGGAAAACGAGAGGTTACAGGAGGAGATTAAACTAGCTCGTGAACTCAAAGAGGCTA 895
|| | |||||||||||||||||||||||||||||||| || | || ||||||||||| |
Sbjct 839 CTACCGAAAACGAGAGGTTACAGGAGGAGATTAAACTTTCTGGCGAGCTCAAAGAGGCAA 898
Query 896 AGAGTGCGATGCAAGAAATTTATGATGAAGAAAGCTCATACAAAAGCTTGGTGGGCTCAC 955
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 899 AGAGTGCGATGCAAGAAATTTATGATGAAGAAAGTTCATACAAAAGCTTGGTGGGTTCAC 958
Query 956 TCACTGTGGAATTGGATGGAGTGCagagagagaacagagaattgaagggaaaagagaagg 1015
||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 959 TCACTGTGGAATTAGATGGAGTGCAGAGAGAAAACAGAGAATTGAAGGGAAAGGAGAAGG 1018
Query 1016 agagacaaaaagttgaagaaggagaaTGGGTAGAAGCGAGTCGGAAAGTGGACGAAATCA 1075
|||||||| ||| |||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 1019 AGAGACAAGAAGCTGAAGAAGGAGAATGGGTAGAAGCGAGTCGTAAAGTTGATGAAATCA 1078
Query 1076 TGAGTGAAGCAGAGAAAACAAGAAAAGAAGCGGAAGAGATGAGGATGCACGTGGATGAAC 1135
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1079 TGCGTGAAGCAGAGAAAACAAGAAAAGAAGCGGAAGAGATGAGGATGAACGTGGATGAAC 1138
Query 1136 TCAGGAGAGAAGCAGCAGCAACACATATGGTAATGGGTGAAGCAGTGAAACAGCTCGAGA 1195
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TCAGGAGAGAAGCAGCAGCAAAACATATGGTAATGGGTGAAGCAGTGAAACAGCTCGAGA 1198
Query 1196 TAGTTGGAAGAGCGGTGGAGAAAGCGAAAACCGCGGAGAAAAGAGCTGTGGAAGACATGA 1255
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1199 TAGTTGGAAGAGCGGTGGAGAAAGCGAAAACCGCAGAGAAAAGAGCTGTGGAAGACATGA 1258
Query 1256 AAGTTCTTACTGAGAAGAAAGAGAGTCTAACACATGATGAGCCTGATAAGAAGATTAGAA 1315
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1259 AAGTCCTTACTGAGAAGAAAGAGAGTCTAACACATGATGAGCCTGACAAGAAGATTAGAA 1318
Query 1316 TATCATTGAAAGAGTACGAAGAGTTGAGAGGAAAGCATGAAGAGTCAGAGAGAATGGTTC 1375
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1319 TATCACTGAAAGAGTACGAAGAATTGAGAGGAAAGCATGAAGAGTCAGAGAGAATGGTAC 1378
Query 1376 AGTTTAAAGCGAAAACGGTTGCTGCTCAACTCGAAGAGATCAATGAGAGCAGAATAGAAG 1435
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 1379 AGTTTAAAGCGAAAACGGTTGCGGCTCAGCTGGAAGAGATCAATGAGAGCAGAATAGAAG 1438
Query 1436 GGGAGAGAAAGTTGGAGGAAAAGATTAAAGAGATGGAGGAGTTAAAAGCGGCGATTGATG 1495
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1439 GGGAAAGAAAGTTGGAGGAGAAGATTAAAGAGATGGAGGAGTTAAAAGCTGCGATTGATG 1498
Query 1496 GCGCGTTGAGAAAAGCAGAGATTGCAGAGGAAGCACATTCTATTGTCGATGCTGAACTAA 1555
|||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1499 GCGCGTTGCGAAAAGCAGAGATTGCAGAGGAAGCACACAGTATTGTTGATGCTGAACTAA 1558
Query 1556 GAAAATGGAAACCGCAAGACTTGTAG 1581
||||||||||||| ||||||||||||
Sbjct 1559 GAAAATGGAAACCACAAGACTTGTAG 1584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78061847475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5