BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493157
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17190.1 | Symbols: FPS2 | farnesyl diphosphate synthase 2 |... 1860 0.0
AT5G47770.1 | Symbols: FPS1 | farnesyl diphosphate synthase 1 |... 1214 0.0
> AT4G17190.1 | Symbols: FPS2 | farnesyl diphosphate synthase 2
| chr4:9648527-9650912 REVERSE LENGTH=1292
Length=1292
Score = 1860 bits (1007), Expect = 0.0
Identities = 1073/1106 (97%), Gaps = 0/1106 (0%)
Strand=Plus/Plus
Query 1 ATCTTATCAATGGCGGATCTGAAATCAACCTTCCTCGACGTTTACTCTATTCTCAAGTCT 60
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 39 ATCCTATCAATGGCGGATCTGAAATCAACCTTCCTCGACGTTTACTCTGTTCTCAAGTCT 98
Query 61 GATCTGCTTCAAGATCCTTCCTTTGAATTCACCCACGAGTCTCGTCAATGGCTTGAACGG 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 99 GATCTGCTTCAAGATCCTTCCTTTGAATTCACCCACGAATCTCGTCAATGGCTTGAACGG 158
Query 121 ATGCTTGACTACAATGTACGTGGCGGGAAGCTTAATCGTGGTCTCTCTGTGGTTGATAGC 180
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 159 ATGCTTGACTACAATGTACGCGGAGGGAAGCTAAATCGTGGTCTCTCTGTGGTTGATAGC 218
Query 181 TACAAGCTCTTGAAGCAAGGCCAAGACTTGACGGAGAAAGAGACTTTCCTCTCGTGTGCT 240
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 219 TACAAGCTGTTGAAGCAAGGTCAAGACTTGACGGAGAAAGAGACTTTCCTCTCATGTGCT 278
Query 241 CTCGGGTGGTGCATTGAATGGCTTCAAGCTTATTTCCTTGTGCTTGATGACATCATGGAC 300
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 CTTGGTTGGTGCATTGAATGGCTTCAAGCTTATTTCCTTGTGCTTGATGACATCATGGAC 338
Query 301 AACTCTGTCACACGCCGTGGCCAGCCTTGTTGGTTTAGAAAGCCAAAGGTTGGTATGATT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 AACTCTGTCACACGCCGTGGCCAGCCTTGTTGGTTTAGAAAGCCAAAGGTTGGTATGATT 398
Query 361 GCCATTAACGATGGGATTCTACTTCGCAATCATATCCACAGGATTCTCAAAAAACACTTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 399 GCCATTAACGATGGGATTCTACTTCGCAATCATATCCACAGGATTCTCAAAAAGCACTTC 458
Query 421 AGGGAAATGCCTTACTATGTTGACCTTGTTGATTTGTTTAACGAGGTAGAGTTTCAAACA 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 459 AGGGAAATGCCTTACTATGTTGACCTCGTTGATTTGTTTAACGAGGTAGAGTTTCAAACA 518
Query 481 GCTTGTGGCCAGATGATTGATTTGATCACTACCTTTGATGGAGAAAAAGATTTGTCTAAG 540
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 519 GCTTGCGGCCAGATGATTGATTTGATCACCACCTTTGATGGAGAAAAAGATTTGTCTAAG 578
Query 541 TACTCCTTGCAAATCCATCGGCGTATTGTCCAGTACAAAACAGCTTATTACTCATTTTAT 600
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 579 TACTCCTTGCAAATCCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTAT 638
Query 601 CTTCCTGTTGCTTGTGCATTGCTTATGGCGGGAGAAAATTTGGAAAACCATACTGATGTG 660
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 639 CTTCCTGTTGCTTGCGCATTGCTCATGGCGGGAGAAAATTTGGAAAACCATACTGATGTG 698
Query 661 AAGAATGTTCTTGTTGACATGGGAATTTACTTTCAAGTACAGGATGATTATCTGGATTGT 720
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 699 AAGACTGTTCTTGTTGACATGGGAATTTACTTTCAAGTACAGGATGATTATCTGGACTGT 758
Query 721 TTTGCTGATCCCGAGACACTTGGCAAGATAGGGACAGACATAGAGGATTTCAAATGCTCC 780
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 759 TTTGCTGATCCTGAGACACTTGGCAAGATAGGGACAGACATAGAAGATTTCAAATGCTCC 818
Query 781 TGGTTGGTGGTTAAGGCATTGGAACGCTGCAATGAAGAACAAACTAAGATATTATACGAG 840
|||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 819 TGGTTGGTAGTTAAGGCATTGGAACGCTGCAGTGAAGAACAAACTAAGATACTATACGAG 878
Query 841 AACTATGGTAAAGCCGAACCATCAAACGTTGCTAAGGTGAAAGCTCTCTACAAAGAGCTT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 AACTATGGTAAAGCCGAACCATCAAACGTTGCTAAGGTGAAAGCTCTCTACAAAGAGCTT 938
Query 901 GATCTCGAGGGAGCGTTCATGGAATATGAGAAGGAAAGCTATGAGAAGCTGACAAAGTTG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 GATCTCGAGGGAGCGTTCATGGAATATGAGAAGGAAAGCTATGAGAAGCTGACAAAGTTG 998
Query 961 ATCGAAGCTCACCAGAGTAAAGCAATTCAAGCAGTGCTAAAATCTTTCTTGGCTAAGATC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 ATCGAAGCTCACCAGAGTAAAGCAATTCAAGCAGTGCTAAAATCTTTCTTGGCTAAGATC 1058
Query 1021 TACAAGAGGCAGAAGTAGAGACCTACTCTGGCTTCTCTCCGTTTAATTCTTCTGACATTT 1080
|||||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||||||
Sbjct 1059 TACAAGAGGCAGAAGTAGAGACATACTCGGGCCTCTCTCCGTTTTATTCTTCTGACATTT 1118
Query 1081 ATGTATTGTTTCATGACCTCTTTTGC 1106
|||||||| | |||||| ||||||||
Sbjct 1119 ATGTATTGGTGCATGACTTCTTTTGC 1144
> AT5G47770.1 | Symbols: FPS1 | farnesyl diphosphate synthase 1
| chr5:19345173-19347629 FORWARD LENGTH=1493
Length=1493
Score = 1214 bits (657), Expect = 0.0
Identities = 909/1032 (88%), Gaps = 11/1032 (1%)
Strand=Plus/Plus
Query 16 GATCTGAAATCAACCTTCCTCGACGTTTACTCTATTCTCAAGTCTGATCTGCTTCAAGAT 75
||||| || |||||||| ||| ||||||| ||| ||||||||||||| || ||||| ||
Sbjct 257 GATCTCAAGTCAACCTTTCTCAACGTTTATTCTGTTCTCAAGTCTGACCTTCTTCATGAC 316
Query 76 CCTTCCTTTGAATTCACCCACGAGTCTCGTCAATGGCTTGAACGGATGCTTGACTACAAT 135
|||||||| ||||||||| | || ||||||| ||| |||| |||||||| |||||||||
Sbjct 317 CCTTCCTTCGAATTCACCAATGAATCTCGTCTCTGGGTTGATCGGATGCTGGACTACAAT 376
Query 136 GTACGTGGCGGGAAGCTTAATCGTGGTCTCTCTGTGGTTGATAGCTACAAGCTCTTGAAG 195
|||||||| ||||| || ||||| ||||||||||| ||||| || | ||| || ||||||
Sbjct 377 GTACGTGGAGGGAAACTCAATCGGGGTCTCTCTGTTGTTGACAGTTTCAAACTTTTGAAG 436
Query 196 CAAGGCCAA-GACTTGACGGAGAAAGAGACTTTCCTCTCGTGTGCTCTCGGGTGGTGCAT 254
||||| ||| || ||||| ||| ||||| ||||||||| ||||||||||| ||||||||
Sbjct 437 CAAGG-CAATGATTTGACTGAGCAAGAGGTTTTCCTCTCTTGTGCTCTCGGTTGGTGCAT 495
Query 255 TGAATGGCTTCAAGCTTATTTCCTTGTGCTTGATGACATCATGGACAACTCTGTCACACG 314
||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct 496 TGAATGGCTCCAAGCTTATTTCCTTGTGCTTGATGATATTATGGATAACTCTGTCACTCG 555
Query 315 CCGTGGCCAGCCTTGTTGGTTTAGAAAGCCAAAGGTTGGTATGATTGCCATTAACGATGG 374
|||||| || ||||| ||||| ||| || ||||||||||| ||||||| || |||||
Sbjct 556 CCGTGGTCAACCTTGCTGGTTCAGAGTTCCTCAGGTTGGTATGGTTGCCATCAATGATGG 615
Query 375 GATTCTACTTCGCAATCATATCCACAGGATTCTCAAAAAACACTTCAGGGA-AATGCCTT 433
|||||||||||||||||| |||||||||||||||||||| || ||| | || || |||||
Sbjct 616 GATTCTACTTCGCAATCACATCCACAGGATTCTCAAAAAGCATTTCCGTGATAA-GCCTT 674
Query 434 ACTATGTTGACCTTGTTGATTTGTTTAACGAGGTAGAGTTTCAAACAGCTTGTGGCCAGA 493
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 675 ACTATGTTGACCTTGTTGATTTGTTTAATGAGGTTGAGTTGCAAACAGCTTGTGGCCAGA 734
Query 494 TGATTGATTTGATCACTACCTTTGATGGAGAAAAAGATTTGTCTAAGTACTCCTTG-CAA 552
|||| ||||||||||| |||||||| |||||||| |||||| | |||||||| ||| | |
Sbjct 735 TGATAGATTTGATCACCACCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTC-A 793
Query 553 ATCCATCGGCGTATTGTCCAGTACAAAACAGCTTATTACTCATTTTATCTTCCTGTTGCT 612
||||| || |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 794 ATCCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCCTGTTGCT 853
Query 613 TGTGCATTGCTTATGGCGGGAGAAAATTTGGAAAACCATACTGATGTGAAGAATGTTCTT 672
||||| ||||||||||| || ||||||||||||||||||| |||||||||||||||||||
Sbjct 854 TGTGCGTTGCTTATGGCCGGCGAAAATTTGGAAAACCATATTGATGTGAAGAATGTTCTT 913
Query 673 GTTGACATGGGAATTTACTTTCAAGTACAGGATGATTATCTGGATTGTTTTGCTGATCCC 732
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 914 GTTGACATGGGAATCTACTTCCAAGTGCAGGATGATTATCTGGATTGTTTTGCTGATCCC 973
Query 733 GAGACACTTGGCAAGATAGGGACAGACATAGAGGATTTCAAATGCTCCTGGTTGGTGGTT 792
||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||
Sbjct 974 GAGACGCTTGGCAAGATAGGAACAGATATAGAAGATTTCAAATGCTCGTGGTTGGTGGTT 1033
Query 793 AAGGCATTGGAACGCTGCAATGAAGAACAAACTAAGATATTATACGAGAACTATGGTAAA 852
|||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1034 AAGGCATTAGAGCGCTGCAGCGAAGAACAAACTAAGATATTATATGAGAACTATGGTAAA 1093
Query 853 GCCGAACCATCAAACGTTGCTAAGGTGAAAGCTCTCTACAAAGAGCTTGATCTCGAGGGA 912
|||| ||||| ||||||||||| ||||| | ||||||||||||||| ||||| ||||||
Sbjct 1094 CCCGACCCATCGAACGTTGCTAAAGTGAAGGATCTCTACAAAGAGCTGGATCTTGAGGGA 1153
Query 913 GCGTTCATGGAATATGAGAAGGAAA-GCTATGAGAAGCTGACAA-AGTTGATCGAAGCTC 970
| |||||||| ||||||| | ||| |||| ||||||||||| || ||| || | |
Sbjct 1154 GTTTTCATGGAGTATGAGA-GCAAAAGCTACGAGAAGCTGACTGGAGC-GATTGAGGGAC 1211
Query 971 ACCAGAGTAAAGCAATTCAAGCAGTGCTAAAATCTTTCTTGGCTAAGATCTACAAGAGGC 1030
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1212 ACCAAAGTAAAGCAATCCAAGCAGTGCTAAAATCCTTCTTGGCTAAGATCTACAAGAGGC 1271
Query 1031 AGAAGTAG-AGA 1041
|||||||| |||
Sbjct 1272 AGAAGTAGTAGA 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55471602225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5