BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493160
Length=950
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17170.1 | Symbols: AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1... 1546 0.0
AT4G17160.1 | Symbols: ATRAB2B, ATRABB1A, RABB1a | RAB GTPase h... 699 0.0
> AT4G17170.1 | Symbols: AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C,
ATRAB-B1B, RAB-B1B | RAB GTPase homolog B1C | chr4:9644713-9646366
REVERSE LENGTH=977
Length=977
Score = 1546 bits (837), Expect = 0.0
Identities = 927/966 (96%), Gaps = 24/966 (2%)
Strand=Plus/Plus
Query 1 TCGCTGGATTTGCTGGAAAACAAACCGTCATTTCTCCGTCTTTATAGAGaaaaaaaGA-- 58
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 TCGCTGGATTTGCTGGAAAACAAACCGTCA-ATCTCCGTCTTTATAGAGAAAAAAAGATT 59
Query 59 ---TTCTCTTCTCG------TCATCGTCTTAAAG--GG-ATTCGtttttttCTCGCCTGA 106
||||||||||| |||||||||||||| || ||||| |||| ||||||||
Sbjct 60 CTCTTCTCTTCTCGTTCTCATCATCGTCTTAAAGAAGGAATTCG--ATTTT-TCGCCTGA 116
Query 107 ACCTGCGGATTTTCTTTCGATTCTTCAAATTCAATGTCTTATGCTTATCTCTTCAAGTAT 166
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 ACCTGCGGA--TT-TTTCGATTCTTCAAATTCAATGTCTTATGCTTATCTCTTCAAGTAT 173
Query 167 ATCATCATCGGCGATACTGGAGTAGGGAAATCATGTCTTCTGCTTCAGTTCACCGACAAG 226
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 174 ATCATCATCGGCGATACTGGAGTGGGGAAATCATGTCTTCTGCTTCAGTTCACCGACAAG 233
Query 227 AGGTTTCAGCCGGTGCATGACCTTACCATTGGTGTTGAATTTGGGGCTAGGATGATCACC 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 AGGTTTCAGCCGGTGCATGACCTTACCATTGGTGTTGAATTTGGGGCTAGGATGATCACC 293
Query 287 ATCGACAACAAACCTATCAAGCTTCAGATCTGGGATACGGCTGGTCAAGAATCCTTTAGG 346
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 ATCGATAACAAACCTATCAAGCTTCAGATCTGGGATACGGCTGGTCAAGAATCCTTTAGG 353
Query 347 TCTATTACAAGGTCATACTATAGAGGAGCTGCAGGGGCATTGCTTGTCTATGATATCACA 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TCTATTACAAGGTCATACTATAGAGGAGCTGCAGGGGCATTGCTTGTCTATGATATCACA 413
Query 407 AGGAGGGAGACATTTAACCATCTAGCTAGCTGGCTAGAAGATGCAAGGCAGCATGCAAAT 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 AGGAGGGAGACATTTAACCATCTAGCTAGCTGGCTAGAAGATGCAAGGCAGCATGCAAAT 473
Query 467 GCAAATATGACGATAATGCTCATTGGGAATAAGTGTGATCTTGCTCACAGAAGGGCTGTG 526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 474 GCAAATATGACGATAATGCTCATTGGGAATAAGTGTGATCTTGCTCACAGAAGGGCAGTG 533
Query 527 AGCACAGAGGAAGGAGAGCAGTTTGCAAAGGAGCACGGTCTTATATTCATGGAGGCCTCT 586
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AGTACAGAGGAAGGAGAGCAGTTTGCAAAGGAGCACGGTCTTATATTCATGGAGGCCTCT 593
Query 587 GCCAAGACTGCTCAGAATGTTGAGGAGGCATTCATTAAGACAGCCGCAACAATATACAAG 646
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 594 GCCAAGACTGCTCAGAATGTTGAGGAGGCATTCATTAAGACAGCTGCAACAATATACAAG 653
Query 647 AAGATTCAAGATGGTGTGTTTGATGTGTCAAATGAGTCATATGGAATAAAAGTTGGATAT 706
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 654 AAGATTCAAGATGGTGTGTTTGATGTGTCAAATGAGTCATATGGAATCAAAGTTGGATAT 713
Query 707 GGAGGAATTCCAGGACCATCAGGTGGAAGAGATGGATCTACCTCCCAAGGAGGAGGGTGC 766
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 714 GGAGGAATTCCAGGACCATCAGGTGGAAGAGATGGATCAACCTCGCAAGGAGGAGGGTGC 773
Query 767 TGCGGCTGAGATGGGAAA--TATGTCTATATCATCATGTAAAAATGATCACATATGATAT 824
|||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||
Sbjct 774 TGCGGCTGAGATGGGAAAAATATGTCTATGTCATTATGTAAAAATGATCACATATGATAT 833
Query 825 AGCAAAAATGTCTCTGCTTCTTTTCTATAGTTGTAAATCGTTTTGGAATTCGATTTGGTG 884
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 834 AGCAAAAATGTCTCTGCTTCTTT-CTATAGTTGTAAATCGTTTTGGAATTCGATTTGGTG 892
Query 885 ACTGTGTTGTGATGGGTTTTGGAACGGTTTGACAATACACGTGTATGTCTATTCATATAT 944
||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 893 ACTGTGTTGTGGTTGGTTTTGGAACGGTTTGACAATACACGTGTATGCCTATTCATATAT 952
Query 945 CTAAAA 950
||||||
Sbjct 953 CTAAAA 958
> AT4G17160.1 | Symbols: ATRAB2B, ATRABB1A, RABB1a | RAB GTPase
homolog B1A | chr4:9641980-9643541 REVERSE LENGTH=618
Length=618
Score = 699 bits (378), Expect = 0.0
Identities = 491/546 (90%), Gaps = 6/546 (1%)
Strand=Plus/Plus
Query 140 ATGTCTTATGCTTATCTCTTCAAGTATATCATCATCGGCGATACTGGAGTAGGGAAATCA 199
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGTCTTATGCTTATAGATTTAAGTATATCATCATCGGTGATACTGGAGTAGGGAAATCA 60
Query 200 TGTCTTCTGCTTCAGTTCACCGACAAGAGGTTTC-AGCCGGTGCATGACCTTACCATTGG 258
|| ||||||||| ||||||||||||||||||||| || | |||||||| || ||||||||
Sbjct 61 TGCCTTCTGCTTAAGTTCACCGACAAGAGGTTTCAAG-CAGTGCATGATCTCACCATTGG 119
Query 259 TGTTGAATTTGGGGCTAGGATGATCACCATCGACAACAAACCTATCAAGCTTCAGATCTG 318
||||||||||||||| | || |||||| |||||||||||||| ||||| |||||||||||
Sbjct 120 TGTTGAATTTGGGGCCAAGACGATCACTATCGACAACAAACCCATCAAACTTCAGATCTG 179
Query 319 GGATACGGCTGGTCAAGAATCCTTTAGGTCTATTACAAGGTCATACTATAGAGGAGC-TG 377
||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || ||
Sbjct 180 GGATACGGCTGGTCAAGAATCATTTAGGTCTGTTACAAGGTCATACTATAGAGG-GCGTG 238
Query 378 CAGGGGCATTGCTTGTCTATGATATCACAAGGAGGGAGACATTTAACCATCTAGCTAGCT 437
| || |||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 239 CCGGTACATTGCTTGTATATGATATCACAAGGAGGGAGACATTTAACCATCTAGCCAGCT 298
Query 438 GGCTAGAAGATGCAAGGCAGCATGCAAATGCAAATATGACGATAATGCTCATTGGGAATA 497
|||||||||| ||||| |||||||||| || ||||||||||| |||||||||||||||||
Sbjct 299 GGCTAGAAGAGGCAAGACAGCATGCAAGTGAAAATATGACGACAATGCTCATTGGGAATA 358
Query 498 AGTGTGATCTTGCTCACAGAAGGGCTGTGAGCACAGAGGAAGGAGAGCAGTTTGCAAAGG 557
|||||||||||| | | |||| | ||||| |||||||||||||| |||||||| | ||
Sbjct 359 AGTGTGATCTTGAAGATAAAAGGACAGTGAGTACAGAGGAAGGAGAACAGTTTGCTAGGG 418
Query 558 AGCACGGTCTTATATTCATGGAGGCCTCTGCCAAGACTGCTCAGAATGTTGAGGAGGCAT 617
|||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 419 AGCATGGTCTTATATTCATGGAGGCCTCTGCTAAGACTGCTCACAATGTCGAGGAGGCAT 478
Query 618 TCATTAAGACAGCCGCAACAATATACAAGAAG-ATTCAAGATGGTGTGTTTGATGTGTCA 676
|| | |||||||||||||||||||||| ||| ||||||||||||||| |||||| | ||
Sbjct 479 TCGTCGAGACAGCCGCAACAATATACAA-AAGGATTCAAGATGGTGTGGTTGATGAGGCA 537
Query 677 AATGAG 682
||||||
Sbjct 538 AATGAG 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46466585975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5