BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493170
Length=1712
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17060.1 | Symbols: FIP2 | FRIGIDA interacting protein 2 | c... 2859 0.0
> AT4G17060.1 | Symbols: FIP2 | FRIGIDA interacting protein 2 |
chr4:9593529-9595249 REVERSE LENGTH=1721
Length=1721
Score = 2859 bits (1548), Expect = 0.0
Identities = 1664/1719 (97%), Gaps = 12/1719 (1%)
Strand=Plus/Plus
Query 1 GCGCGTATTCGGCGGCGGTGGAGAAGGTTTCGTCGGGTGCGCACACGTCA--C-CCACTC 57
|||||||||| |||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 1 GCGCGTATTCAGCGGCGGTGGAGAAGGTTGCGTCGGGTGCGCACACGTCACCCACCACTC 60
Query 58 CGCGGCGCACTTTAGCACAACTCTCAACCGGCCACCTCCTTCTCGGCCCAATCCTTCTTT 117
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 61 CGCGGCGCACTTTAGCACAATTCTCAACCGGCCACCTCCTTCTCGGCCCAATCCATCATT 120
Query 118 AACCTAACtttttttttCTAACGTGCGCCTCTCCTCTCCTCCGCCTCTTTATTATCTCTT 177
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 AACCTAAC-TTTTCTTTCTAACGTGCGCCTCTCCTCTCCTCCGCCTCTTTATTATCCCTT 179
Query 178 ACCCACCGCTCTTTCTACTTTCACTAATTTATTCTTCGCCGCCGCAATGTCAATCCCCGA 237
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 180 ACCCACCGCTCTTTCTACTTTCACTAATTTATTCTTCGCCGCCGCAATGACAATACCCGA 239
Query 238 TGATGGATCTCCCGTCGCCATGGCCATCGATTCTTCCACCGCCGTAACCGTCGCCACCAC 297
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 240 TGATGGATCTCCCGTCGCCATGGCCATCGATTCTTCCA-CGCCGTAACCGTCGCCACCAC 298
Query 298 CACTACTAGAAGAGTTCCTCCTCCGTGCTGGACCGACGAAGAAACCGCTGCGCTTGTCAA 357
||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 299 CACCACTCGAAGAGTTCCTCCTCCGTGCTGGACCGACGAGGAAACCGCTGCGCTTGTCAA 358
Query 358 TGCCTACAAGGATAAATGGTTCGCCCTCCGCCGTGGGAACCTCCGTGCGGCTGATTGGGA 417
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 359 TGCCTACAAGGATAAATGGTTCGCCCTCCGCCGCGGGAACCTCCGTGCGGCTGATTGGGA 418
Query 418 CGACGTCGCCGCGGCTGTTTCGTCCTCGTCCACC-TTGGGAGGTCCGCCGAAATCAGCAA 476
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 419 TGACGTCGCCGCGGCTGTTTCGTCCTCGTCCACCGTT-GGAGGTCCGCCGAAATCAGCAA 477
Query 477 TCCAATGTCGACACAAGATCGAGAAGCTACGGAAACGTTATCGCGGCGAAAAACAACG-G 535
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 478 TCCAATGTCGACACAAGATCGAGAAGCTTCGGAAACGTTATCGCGGCGAAAAACAACGAG 537
Query 536 TCTCTTAATCGACCAGGCAAGTTCTCTTCCTCTTGGGATTTGTTCCCAATCTTGGATGCT 595
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 538 -CTCTTAATCGACCAGGCAAGTTCTCTTCCTCTTGGGATTTGTTCCCTATCTTGGATGCT 596
Query 596 ATGGGATTCGCTCCGGTGACTCCGGCAGCCGTAGAAACTTACGATCCCGATGTGGATCAT 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ATGGGATTCGCTCCGGTGACTCCGGCAGCCGTAGAAACTTACGATCCCGATGTGGATCAT 656
Query 656 GATGATGAGAGTAACGGTTTGGATGGATTTAGGGTTAGATCGAAGAGGTCTGGGAAGTTT 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GATGATGAGAGTAACGGTTTGGATGGATTTAGGGTTAGATCGAAGAGGTCTGGGAAGTTT 716
Query 716 AGCGGTGGTTACTCTGATTCACCTCGAGATGTAGGAGATGGATATGGGGTTAGATCTAGG 775
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 717 AGCGGTGGTTACTCTGATTCACCTCGAGAAGTAGGAGATGGATATGGGGTTAGATCTAGG 776
Query 776 GCAAGGAGTAACATGAAATTGTATGGTGGTTTCAAGTCTGAGTTTGAATCAGATCACGAT 835
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 777 GCAAGGAGTAACATGAAAATGTATGGTGGTTTCAAGTCTGAGTTTGATTCAGATCACGAT 836
Query 836 TCAGGAAGTGGATTTGGATTGAAAAGGAAATACAATGGGAATCCAAAGGTTAGTGCTGAC 895
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TCAGGAAGTGGATTTGGATTGAAAAGGAAATACAATGGGAATCCAAAGGTTAGTGCTGAT 896
Query 896 TTCGATGCTGATTCTGATGATGAGATTGTGTTAGTCCCCAAGGCAACTAGGCTTAGGGGT 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 897 TTCGATGCTGATTCTGATGATGAGATTGTGTTAGTCCCCAAGGCAACTAGGCTTAGGACT 956
Query 956 CATGGCAAGCCTTCCTCTGGCGAATTTAGCCATGGCGGTGGTGGTGGTTTTCCGTTGAAG 1015
|||||||||||||||||||| || |||||||||||| |||||||||| ||||||||||||
Sbjct 957 CATGGCAAGCCTTCCTCTGGTGATTTTAGCCATGGCAGTGGTGGTGGGTTTCCGTTGAAG 1016
Query 1016 TCGTTTGGTGATCGAAATTTCGCTTCTCATGGATTTAAACCCAAGAATTTCAGTAAGCCT 1075
|||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 1017 TCGTTTGGTGATCGGAATTTTGCTTCTCATGGGTTTAAACCTAAGAATTTCAGTAAGCCT 1076
Query 1076 GAACCCAATTTCTCTCAGGATCTGGATTATGATGATGAGTTTGATGATGATAGAGCAGAG 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GAACCCAATTTCTCTCAGGATCTGGATTATGATGATGAGTTTGATGATGATAGAGCAGAG 1136
Query 1136 AGGGAAGGATTCAACCCGAGGATTCAAAGTTCTAGAAGCTCTTCGCGGGTGAATGGCTAC 1195
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1137 AGGGAAGGATTCAACCCGAGGATTCAAAGTTCTAGGAGCTCTTCGCGGGTGAATGGCTAC 1196
Query 1196 AGCAGGAAGGATGGGAGCTATCCTCGAAACACTGGTGTTTCCAATGGCTATGGATCGTCT 1255
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1197 AGCAGGAAGGATGGGAGCTATCCTCGAAACACTGGTGCTTCCAATGGCTATGGATCGTCT 1256
Query 1256 TCTAGGTTCAAGCAGGAGCAAATGAATGCAGCAGCAGAAGTTGAGTCTGACCCGATTGAT 1315
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1257 TCTAGGTTCAAGCATGAGCAAATGAATGCAGCAGCAGAAGTTGAGTCTGACCCGATCGAT 1316
Query 1316 GAAGTTGTCTCTTCTGTTAAGATGTTGACAGAAATGTTTGTGAGGGtggagaattcgaag 1375
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GAAGTTGTTTCTTCTGTTAAGATGTTGACAGAAATGTTTGTGAGGGTGGAGAATTCGAAG 1376
Query 1376 atggagatgatgagagagatggagaagtcgagaatggagatggagCTGAAGCATTGCCAG 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 ATGGAGATGATGAGAGAGATGGAGAAGTCGAGAATGGAGATGGAGCTGAAGCATTGCCAG 1436
Query 1436 ATGATGCTTGAGTCGCAGCAGCAGATCATAGGCGCGTTTGCTGAAGCATTGAGCGAGAAA 1495
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1437 ATGATGCTTGAGTCACAGCAGCAGATCATAGGCGCGTTTGCTGAAGCGTTGAGCGAGAAA 1496
Query 1496 AAGAGCACAAATGCAAGGAGGCCGGTTTAGTAGTAGCAAACTCTCTTATTCAAGAGGAAT 1555
|||||||||||||||||||||||||||| ||||||||||| || |||||| |||||||||
Sbjct 1497 AAGAGCACAAATGCAAGGAGGCCGGTTTCGTAGTAGCAAAGTCGCTTATTAAAGAGGAAT 1556
Query 1556 GAA-CGGTTTCATAATATGGATTTTCATATGGTATAATGATCAAATAGCTTTCGAGTGTA 1614
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 GAAACGGTT-CATAATATGGATTTTCATATGGTATAATGATCAAATAGCTTTCGAGTGTA 1615
Query 1615 GTACGAAGTGTCTTCTTCGAGTTACTAGGAACCAAAACGGCAGTGAAATTTGATGCGAGT 1674
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1616 GTACGAAGTGTCTTCTTCGAGTTACTAGGAAACAAAACGGCAGTGAAATTTGATGCGAGT 1675
Query 1675 AATGCAGGTTAAGGTTTT-AATTATTGGCATTTTGATAA 1712
||||||||||||| |||| ||||||||||||||||||||
Sbjct 1676 AATGCAGGTTAAGTTTTTCAATTATTGGCATTTTGATAA 1714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84638118870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5