BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493171
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17050.1 | Symbols: UGLYAH | ureidoglycine aminohydrolase | ... 1622 0.0
> AT4G17050.1 | Symbols: UGLYAH | ureidoglycine aminohydrolase
| chr4:9589567-9592587 FORWARD LENGTH=1166
Length=1166
Score = 1622 bits (878), Expect = 0.0
Identities = 955/993 (96%), Gaps = 1/993 (0%)
Strand=Plus/Plus
Query 14 TTCTTCAGATTTTTATAAACATGAATGAAACCTGAATCGTTTCACTAATTCTCAGCAAAA 73
||| ||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||
Sbjct 37 TTC-TCAGATTTTTATAAACATGAATGAAACCTGAATTGTTCCACTAACTCTCAGCAAAA 95
Query 74 ATGCGATCACGTCACTTAATCGTTTTCATTGTTATCAGTCTTGTTAAAGCTTCGAAAAGC 133
|||||||||| | |||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 96 ATGCGATCACTTTACTTAATCGTCTTCATCGTTATTAGTCTTGTTAAAGCTTCGAAAAGC 155
Query 134 GATGATGGGTTTTGTTCAGCGCCTTCGATTGCTGAATCGGATGAGAAGACGAAACCCATT 193
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 156 GATGATGGGTTTTGTTCAGCGCCTTCGATTGTTGAATCGGATGAGAAGACGAACCCCATT 215
Query 194 TATTGGAAAGCCACGAATCCAACACTCTCTCCTTCACACCTCCAAGACTTGCCTGGTTTC 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 TATTGGAAAGCCACGAATCCAACACTCTCTCCTTCACACCTCCAAGACTTGCCTGGTTTC 275
Query 254 ACACGAAGTGTATACAAACGAGATCATGCGTTAATAACACCGGAAAGTCATGTATACAGC 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 ACACGAAGTGTATACAAACGAGATCATGCGTTAATAACACCGGAAAGTCATGTATACAGC 335
Query 314 CCTTTACCTGACTGGAAAAACACATTAGGGGCATATTTGATCACACCGGCAACGGGATCC 373
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 336 CCTTTACCTGACTGGACAAACACATTAGGGGCGTATTTGATCACACCGGCAACGGGTTCC 395
Query 374 CATTTTGTCATGTACTTGGCGAATATGAAAGAAATGTCAAGTTCAGGTTTGCCTCCACAA 433
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 396 CATTTTGTCATGTACTTGGCGAAAATGAAAGAAATGTCAAGTTCAGGTTTGCCTCCACAA 455
Query 434 GACATAGAGCGTCTTGTATTCGTGGTCGAGGGTGCTGTGACACTCACTAACACATCCAGT 493
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 GACATAGAGCGTCTTATATTCGTGGTCGAGGGTGCTGTGACACTCACTAACACATCCAGT 515
Query 494 TCTTCAAAACAATTGACGGTTGATTCATATGCGTACCTACCTCCAAACTTTCATCATTCC 553
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 516 TCTTCAAAAAAATTGACGGTTGATTCATATGCGTACCTACCTCCAAACTTTCACCATTCC 575
Query 554 ATGGACTGTGTTGAGTCTGCAACACTTGTTGTCTTCGAGCGGAGGTATGAACATCTAGGA 613
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 576 TTGGACTGTGTTGAGTCTGCAACACTTGTTGTCTTCGAGCGGAGGTATGAATATCTAGGA 635
Query 614 AGTCATACTACAGAGCTCATCGTTGGCTCCACAGACAAGCAACCACTACTTGAGACTCCT 673
||||| || |||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 636 AGTCACACCACAGAGCTTATTGTTGGCTCCACAGACAAGCAACCACTACTCGAGACTCCT 695
Query 674 GGTGAGGTTTTTGAACTGCGGAAACTACTTCCGATGTCCCTTGCTTACGACTTTAACATC 733
|||||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||||
Sbjct 696 GGTGAGGTTTTTGAACTGCGGAAACTTCTTCCGATGTCCGTTGCTTATGACTTCAACATC 755
Query 734 CATATTATGGATTTTCAGCCTGGAGAGTTTCTAAATGTTAAGGAAGTTCATTATAACCAA 793
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 756 CATACTATGGATTTTCAGCCTGGAGAGTTTCTGAATGTTAAGGAAGTTCATTATAACCAG 815
Query 794 CATGGTTTGTTGCTTCTGGAGGGCCAAGGCATTTATCGCTTGGGCGATAACTGGTATCCA 853
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 816 CATGGTTTGTTGCTTCTGGAGGGGCAAGGCATTTATCGCTTGGGTGATAACTGGTATCCA 875
Query 854 GTTCAGGCTGGTGATGTCATATGGATGGCTCCTTTTGTCCCTCAATGGTATGCTGCACTC 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 GTTCAGGCTGGTGATGTCATATGGATGGCTCCTTTTGTCCCTCAATGGTATGCTGCACTC 935
Query 914 GGAAAGACTAGGTCTCGGTATTTGTTGTACAAAGATGTGAATCGAAATCCATTGTGATCA 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 GGAAAGACTAGGTCTCGGTATTTGTTGTACAAAGATGTGAATCGAAATCCATTGTGATCA 995
Query 974 AAGGTTTATATGACTTTGCACTAAAAGCCAGAA 1006
||| || ||||||||||||| |||||| |||||
Sbjct 996 AAGATTGATATGACTTTGCAGTAAAAGTCAGAA 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51957564075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5