BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493172
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17040.1 | Symbols: CLPR4 | CLP protease R subunit 4 | chr4:... 1736 0.0
> AT4G17040.1 | Symbols: CLPR4 | CLP protease R subunit 4 | chr4:9585705-9589362
REVERSE LENGTH=1247
Length=1247
Score = 1736 bits (940), Expect = 0.0
Identities = 1054/1108 (95%), Gaps = 12/1108 (1%)
Strand=Plus/Plus
Query 1 TCGTTATCGTTTCAGGGTCTCGA-CGActcttctttctctctctctttctctctGCAACA 59
||||||||||||| ||||| | | |||| ||| |||| | ||| |||||||||||||
Sbjct 4 TCGTTATCGTTTCGGGGTCAC-AGGGACT-TTC--ACTCT-T-TCTCTCTCTCTGCAACA 57
Query 60 AACAAAAAATGGAGGTAGCAGCAGCGACTGCGACGAGTTTCACAACGCTCCGAGCTCGTA 119
|| || ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 58 AAGAAGAAATGGAGGTAGCAGCAGCGACTGCGACGAGCTTCACAACGCTTCGAGCTCGTA 117
Query 120 CGTCAGCGATTATCCCGTCTTCTACACGTAACCTGAGATCTAAACCGAGATTTTCTTCAT 179
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 118 CGTCAGCGATTATCCCGTCTTCTACACGTAATCTGAGATCTAAACCGAGATTTTCTTCAT 177
Query 180 CTTCTTCGCTTAGAGCTTCTCTTTCGAATGGCTTTCTCTCGCCGTATACCGCAGGAAGCA 239
|||| || || |||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 178 CTTCATCTCTCAGAGCTTCTCTTTCGAATGGCTTTCTTTCGCCGTATACCGGAGGAAGCA 237
Query 240 TCTCTAGTGACTTCTGCGGCGCTAAGCTTCGAACGGAATCGCTTAATCCGTTAAATTTGT 299
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 238 TCTCTAGTGACTTATGCGGCGCTAAGCTTCGTGCGGAATCGCTTAATCCGTTAAATTTTT 297
Query 300 CTAGTTCCAAACCTAAGCGTGGAGTTGTCACTATGGTTATACCTTTCTCAAAGGGAAGTG 359
| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CCAGTTCCAAGCCTAAACGCGGAGTTGTCACTATGGTTATACCTTTCTCAAAGGGAAGTG 357
Query 360 CACACGAACAACCTCCTCCTGATTTGGCATCATATTTGTTCAAAAACCGAATTGTATATT 419
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 358 CACACGAACAACCTCCTCCTGATTTGGCATCATATTTGTTCAAGAACCGAATTGTATATT 417
Query 420 TGGGAATGTCTCTTGTACCTTCTGTTACTGAGTTGATACTCGCGGAGTTTCTTTACCTTC 479
||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 418 TGGGAATGTCTCTCGTACCTTCAGTTACTGAGTTGATACTTGCGGAGTTTCTTTACCTTC 477
Query 480 AGTACGAAGACGAGGAAAAGCCTATTTACCTTTACATAAATTCGACAGGGACAACCAAGA 539
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 478 AGTATGAAGACGAGGAAAAGCCTATTTACCTTTACATAAACTCGACTGGGACAACCAAGA 537
Query 540 ATGGTGAAAAGTTGGGCTATGATACCGAGGCTTTTGCAATCTACGATGTCATGGGGTATG 599
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 538 ATGGTGAAAAGTTGGGCTATGATACTGAGGCTTTTGCAATCTATGATGTCATGGGGTATG 597
Query 600 TCAAACCACCAATCTTTACTCTTTGTGTCGGGAATGCTTGGGGTGAAGCTGCTTTGCTTA 659
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 598 TCAAACCACCAATCTTTACTCTTTGCGTCGGGAATGCTTGGGGTGAAGCTGCTTTGCTTC 657
Query 660 TGACTGCTGGTGCAAAAGGAAATCGTTCTGCGTTGCCCTCATCAACTATTATGATAAAGC 719
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 658 TGACTGCTGGTGCAAAAGGAAATCGATCTGCGTTGCCCTCATCAACTATTATGATAAAGC 717
Query 720 AGCCCATTGCTCGATTTCAAGGCCAAGCAACCGATGTTGAAATTGCAAGGAAAGAAATCA 779
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 718 AGCCCATTGCTCGATTTCAAGGCCAAGCAACTGATGTTGAAATTGCAAGGAAAGAAATCA 777
Query 780 AGCACATAAAGACAGAAATGGTCAAGCTGTATTCAAAGCATATTGGTAAATCCCCTGAGC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 778 AGCACATAAAGACAGAAATGGTCAAGCTGTATTCAAAGCATATTGGTAAATCCCCGGAGC 837
Query 840 AGATTGAAGCTGACATGAAACGCCCGAAATATTTTAGTCCCAGTGAGGCTGTTGAATACG 899
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 838 AGATTGAAGCTGACATGAAACGCCCGAAATATTTTAGTCCCACTGAGGCTGTTGAATATG 897
Query 900 GGATCATTGATAAGGTGGTTTACAATGAAAGGGGCAGCCAAGACAGAGGAGTTGTGTCTG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GGATCATTGATAAGGTGGTTTACAATGAAAGGGGCAGCCAAGACAGAGGAGTTGTGTCTG 957
Query 960 ACCTTAAAAAGGCACAACTCATTTGAATGTCAGAATTGTCTTCCGAAATCCCATGATTAA 1019
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 958 ACCTTAAAAAGGCACAACTCATTTGAATGTCAGAACTGTCTTCCGAAATCCCATGATTAA 1017
Query 1020 CAGGTTGGAAAT-TTGACCGCTGATCAAATGGGGAATCGGTGAACCATTCACCGGC---G 1075
||||||||| || || |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1018 CAGGTTGGAGATCTT-ACCGCTGATCAAATGGGGAATCAGTGAACCATTCACCGGCACAG 1076
Query 1076 AACTGAGGTAAAGTCTGGAAAACATGTT 1103
||||||||||||||||||||||||||||
Sbjct 1077 AACTGAGGTAAAGTCTGGAAAACATGTT 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54065986965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5