BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493174
Length=1811
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17020.3 | Symbols: | transcription factor-related | chr4:9... 2610 0.0
> AT4G17020.3 | Symbols: | transcription factor-related | chr4:9577875-9581439
REVERSE LENGTH=1904
Length=1904
Score = 2610 bits (1413), Expect = 0.0
Identities = 1584/1666 (95%), Gaps = 13/1666 (1%)
Strand=Plus/Plus
Query 1 CAGTTTTCTTCGATTCTGGGTAAT-AATAATC--G----ATTGTA-ATAGAGCTCTTCGA 52
|||||||||| ||||||||||| | ||||||| | |||||| | ||||||| ||||
Sbjct 48 CAGTTTTCTTTGATTCTGGGTAGTAAATAATCGGGATCAATTGTAGA-AGAGCTCATCGA 106
Query 53 GAAAAGTGAGAACCTAAACCCTAAATTCAATTCTGTTTTGTTCTCAAACTC-AAATCGAA 111
|||||| |||||||||||| ||||||||||||||| |||||||||||||| || ||||
Sbjct 107 GAAAAGAGAGAACCTAAACTTTAAATTCAATTCTGTATTGTTCTCAAACTCGAACCCGAA 166
Query 112 ACTTT-AATCCTTCCTTATTCGTTTTCTGGAGTTCTTCTTTAGTAGTGTTTTGGATTCGG 170
||||| |||||||||||||| |||||||||||||||| ||||| | ||||||||||| |
Sbjct 167 ACTTTAAATCCTTCCTTATTTGTTTTCTGGAGTTCTTGTTTAGAACTGTTTTGGATT-TG 225
Query 171 GGTTTGTGGA-GTTCTTCTTTAGTTATCTAGGTTTGCTTCGAGTTGATCTCTGAGTGGCA 229
||| | || | | ||||||||| |||||||||||||||| ||||| ||| ||||||
Sbjct 226 TTTTTTTTGAGGAGATGCTTTAGTTAACTAGGTTTGCTTCGAGCTGATCGCTGTGTGGCA 285
Query 230 TAATCCCTAATTTCGTAGACATTGTGCTCTTTTAGAACCAGTCCAGTGAGTAAGGGAATC 289
||| |||||||||||| || | ||||||||||||||||| ||||||||||||||||||||
Sbjct 286 TAAACCCTAATTTCGTGGAAACTGTGCTCTTTTAGAACCGGTCCAGTGAGTAAGGGAATC 345
Query 290 CAATTGGTGAAGATGCCGCAAGTTAAGATCATCGCCAAAAATTTCATGGACATGGTGGCG 349
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 346 CAATTGGTGAAGATGCCGCAAGTTAAGATCATTGCTAAAAATTTCATGGACATGGTGGCG 405
Query 350 TCTCTTCCCGCCATCAAGCTTGACAAACTCTACAACAATGTGTTTATCTGCGAAGCCATT 409
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 406 TCACTTCCAGCCATCAAGCTTGACAAACTCTACAACAATGTCTTTATCTGCGAAGCCATT 465
Query 410 CTCAGGTCTTTGCCGCCTCTTGCCAAGAAGTATGTATTGCAGATGTTGTACATTAATGTT 469
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 466 CTCAGGTCTTTGCCGCCTCTTGCCAAGAAGTATGTATTGCAGATGTTGTACATTGATGTT 525
Query 470 CCTGTACCTGCTGCGATGATGGAGGAGTGGGTTCTTGCAGATGGTGCCTCTAAGCATAGA 529
|||||||||||| ||||||||||||||||||| || |||||||| ||||||| ||||||
Sbjct 526 CCTGTACCTGCTACGATGATGGAGGAGTGGGTGCTCGCAGATGGCACCTCTAAACATAGA 585
Query 530 GTTGCTATTGATCGACTGATTCAATTAAGGATTTTTTCAGAAACTAGTGATAGGAAAAGG 589
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 586 GTTGCTATTGATCGACTGATTCAATTAAGGATTTTTTCAGAAATTAGTGATAGGAAAAGG 645
Query 590 GGAATCAGTTACAGCCTAAATCCTACATTTCAGAACAATCTTCAGAAACATATAATTTCC 649
|||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 646 GGAACCAGCTACAGCCTAAATCCTACATTTCAGAACAATCTTCAGAAACATATTATTTCC 705
Query 650 GGTGGAGTTTTGCCTAGAGAGCCTATGAATTCCGACAATGCCATTAAACTTCCAAGTCTA 709
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 706 GGTGGAGTTTTGCCTAGAGAGCCTATGAACTCCGACAATGCCATTAAACTTCCAAGCCTA 765
Query 710 CAAGAACTCGAGACCTATGCACTTAAGCAATGGGAGTGTTTCTTGCTACAACTTATAAAT 769
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 CAAGAACTCGAAACCTATGCACTTAAGCAATGGGAGTGTTTCTTGCTACAACTTATAAAT 825
Query 770 TCGGGTCAAGGTGAGAAGCTAACTGGCATCAGTTCATCCATGATGAAAATTTTCCAGCGA 829
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 826 TCGGGTCAAGGTGAAAAACTAACTGGCATCAGTTCATCCATGATGAAAATTTTTCAGCGA 885
Query 830 GGTTTATTGAGTCAGAGAGACAAAGATGGCCCAAGATTAACTGAGAGTGGCTTTCAGTTT 889
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 886 GGTTTATTGAGTCAGAGAGACAAAGATGGCCCGAGATTAACTGAGAGTGGCTTTCAGTTT 945
Query 890 TTGCTGATGGATACAAATGCCCAGCTTTGGTACATTATTCGAGAATACATATCGAATGCT 949
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 946 TTGCTGATGGATACAAATGCCCAGCTTTGGTACATTATTCGAGAATACATATTGAATGCC 1005
Query 950 GAGGAGCGAGATGTAGAACCAGCAGACTTGATTTCGTTTTTGTTGGAGCTTAGTTTTCAT 1009
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 GAGGAGCGAGATGTAGATCCAGCAGACTTGATTTCGTTTTTGTTGGAGCTTAGTTTTCAT 1065
Query 1010 GTTACTGGTGAGGCATATAACTCAAATACCTTGACAGAGGTTCAAAATAATACCCTCAAG 1069
||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1066 GTTACTGGTCAGGCATATAACTTAAATACCTTGACAGAGGTTCAAAACAATACCCTCAAG 1125
Query 1070 GACCTTGCAGACTTGGGATTAGTTAAGCTTCAACAGGGAAGGAAAGACAGTTGGTTTATT 1129
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1126 GACCTTGCAGACTTGGGATTAGTCAAGCTTCAACAGGGAAGGAAAGACAGTTGGTTTATT 1185
Query 1130 CCTACTAAACTGGCTACAAATTTATCAGTCAGTCTGGCAGATTCATCAGCGCGAAAAGAG 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 CCTACTAAACTGGCTACAAATTTATCAGTCAGTCTGGCAGATTCATCAGCGCGAAAAGAG 1245
Query 1190 GGATTTGTCGTGATGGAAACAAATTTCAGGATGTATGCATACTCCACATCTAAGTTACAG 1249
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 1246 GGATTTGTCGTGATGGAAACAAACTTCAGAATGTATGCGTACTCCACATCTAAGTTACAG 1305
Query 1250 TGTGAAATTTTACGACTGTTTGCGAGGATAGAGTACCAACTTCCAAACCTTATTGCTTGT 1309
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 TGTGAAATTTTACGACTATTTGCGAGGATAGAGTACCAACTTCCAAACCTTATTGCTTGT 1365
Query 1310 GCCATTACAAAGGAAAGTTTGTACAATGCATTTGACAATGGCATCACATCAGATCAGATT 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 GCCATTACAAAGGAAAGTTTGTACAATGCATTTGACAATGGCATCACATCAGATCAGATT 1425
Query 1370 ATAACTTTCCTCCAGCAGAATTCTCATCCACGATGTGCTGATCGGGTCCCATCTATTCCA 1429
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1426 ATAACTTTCCTCCAGCAGAATTCTCATCCACGATGTGCTGATCGAGTCCCATCTATTCCA 1485
Query 1430 GAAAATGTCACTGATCAGATTCGGCTTTGGGAGACAGATCTGAAGAGAATTGAGATGACC 1489
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1486 GAAAATGTCACTGATCAGATTCGGCTTTGGGAGACAGATCTGCAGAGAATTGAGATGACC 1545
Query 1490 CAGGCTCACTTCTATGATGAATTTCCTTCAAAAGATGTGTTTGAGGCAGCTTGTGACTTT 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 CAGGCTCACTTCTATGATGAATTTCCTTCAAAAGATGTGTTTGAGGCAGCTTGTGACTTT 1605
Query 1550 GCTCGAGAATGGGGAGGCCTTCTTTGGGAAGACTCTAAGAGAATGCGACTTGTTGTGAAA 1609
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606 GCTCGGGAATGGAGAGGCCTTCTTTGGGAAGACTCTAAGAGAATGCGACTTGTTGTGAAA 1665
Query 1610 TCCGAAGTTCACAATCAGATGCGTGAGTTTCTTCATACCCAAAGCA 1655
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 TCCGAAGTTCACAATCAGATGCGTGAGTTTCTTCATACCCAAAGCA 1711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89607972825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5