BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493176
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17010.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1114 0.0
> AT4G17010.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9575812-9577967
FORWARD LENGTH=1069
Length=1069
Score = 1114 bits (603), Expect = 0.0
Identities = 724/782 (93%), Gaps = 10/782 (1%)
Strand=Plus/Plus
Query 1 GACGGTGTTATCTTACCGCCGGAGCCGGAGTTTCCCAGTATATTGTAGTAAC-GATATCT 59
||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||| |
Sbjct 1 GACGGTGTTATCTTACCGCCGGAGCCGGAGTTTCCCACTCTATTGTAATAACAGATATTT 60
Query 60 CGACCGGAGTTTCTTAGTGAATCCAAA-TCGTTGTTCTTCGTTGCGGCTTCATCTCTCGC 118
|||||||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||
Sbjct 61 CGACCGGAGTTTCTAAGTGAATCCAAATTTGTTGTTCTTCGTTGCGGCTCCATCTCTCGC 120
Query 119 TTGTTAGTCTGCAGAGTCAGGTCTTTTGAGTTATCTCATTTTGGGCGGTCCCGTTTTTCA 178
|| | || | | ||||||||||||||||||||| ||||||| ||| ||||| | ||||
Sbjct 121 -TG-T-GTATTTATAGTCAGGTCTTTTGAGTTATCCCATTTTGCGCGATCCCG-TCTTCA 176
Query 179 CCGTTTCCGAT-TTCCAGCGAGTACGTCTCTGTCGATCGGTAATTAAT-TACCTAGTTGA 236
|||||||| || |||||||||| || ||||||| ||||| ||||| | ||||||||| |
Sbjct 177 CCGTTTCC-ATCTTCCAGCGAGCACATCTCTGTTGATCGATAATT-TTGTACCTAGTTCA 234
Query 237 GTTGCAGGAAAGATGAACAAGCTGTTGGAGTATGGGAGAAAAGCTATGTTCTATGTGAGA 296
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 235 GTTGTAGGAAAGATGAACAAGCTGTTGGAATATGGGAGAAAAGCTATGTTCTATGTGAGA 294
Query 297 GTTCTCTCTGGCTATGAAGAAAGGAGAATCCGTAATTACAGGTTGCAACTCGAAAAGCGT 356
|||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 295 GTTCTCTCCGGCTATGAAGAAAGGAGAATCCGGAGTTACAGGTTGCAACTCGAAAAGCGT 354
Query 357 ATCCAACAGGCTAACCAAAGGAAAGCAGAGATAAACAGACTCCCAGAGCAGATTGTATTA 416
||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 355 ATCCAGCAGGCTAACCAAAGGAAAGTAGAGATAAACAGACTTCCAGAGCAGATTGTATTA 414
Query 417 TCTGAAGTCCGCCGTATGGTTGAGGAGATGCAGAATTTGAATAAGCAGATTGAAAATACG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 415 TCTGAAGTCCGCCGTATGGTTGAGGAGATGCAGAATTTGAATAAGCAGATTGAGAATACG 474
Query 477 GAGGCTCAAATTGAAGACTACTTCAAACCGATAGACAAGCATGCTAGTACCATAATGGAG 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GAGGCTCAAATTGAAGACTACTTCAAACCGATAGACAAGCATGCTAGTACCATAATGGAA 534
Query 537 ATTCAGCTCGAAGGAGAGAAGAAAACGATGGGGACAATGATGAACGCAACACAACAGGAA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 ATTCAGCTCGAAGGAGAGAAGAAAACGATGGGGACAATGATGAACGCAACACAACAGGAA 594
Query 597 GCTATAAGAAAGATTGAAGAAGCTGAGAGACTCGCTCGAGCACGTGGAAATGCAAATGTG 656
|||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 595 GCTATACGAAAGATTGAAGAAGCTGAGAAACTCGCTCGGGCACGTGGAAATGCAAATGTG 654
Query 657 ACCGCAGAGGCAAACACGGGAGATAAGATCCAAGATTCAGAATCCTCAGCCAACGAAAAA 716
|| |||| ||||||| ||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 655 ACTACAGATGCAAACATGGGAGATAAGATCCAGGATTCAGAGTCCTCAGCCAACGAAAAA 714
Query 717 GCTCAAGCAAAATGAAGACGGAACTTGTCTTCATGGCGACACAGAATAGATACAGAGTCT 776
|||||||||||||||| | || |||||||||||| |||||||||||||| ||| ||||
Sbjct 715 TCTCAAGCAAAATGAAGTCAGATCTTGTCTTCATGTTGACACAGAATAGATTCAGCGTCT 774
Query 777 CT 778
||
Sbjct 775 CT 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38127717573
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5