BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493177
Length=2195
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17000.1 | Symbols: | unknown protein; Has 2862 Blast hits ... 3160 0.0
> AT4G17000.1 | Symbols: | unknown protein; Has 2862 Blast hits
to 2331 proteins in 349 species: Archae - 6; Bacteria - 408;
Metazoa - 833; Fungi - 223; Plants - 134; Viruses - 7; Other
Eukaryotes - 1251 (source: NCBI BLink). | chr4:9566902-9569913
REVERSE LENGTH=2169
Length=2169
Score = 3160 bits (1711), Expect = 0.0
Identities = 2048/2205 (93%), Gaps = 46/2205 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGCATTCGAGCATTTGATAGTGGACGAGTTTAACGAAGAAGACTTCTACGAGACG 60
||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGCATTTGAGCATATGATAGTGGATGAGTTTAACGAAGAAGACTTCTACGAGACA 60
Query 61 ATAGAAGCTCCCAAGTTTGTAGACCTCACCGCACCAGATCATCGCCCTGAAGGAGATGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAGAAGCTCCCAAGTTTGTAGACCTCACCGCACCAGATCATCGCCCTGAAGGAGATGAT 120
Query 121 CGTTACTGGTTCTGTTCCAGAGTTGGATGTGATCAGAAGCATGAAGAGTTCATGGATTCG 180
||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||
Sbjct 121 CGTTACTGGTTCTGTTCTAGAGTTGGATGTGATCAGAAGCATGAGGAATTTTTGGATTCG 180
Query 181 GAAGCTATTTACAAAAAATTCGTTCTTCGGGTCATGGCAGCTAGGAGTCCAAGTGTGCGT 240
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GAAGCAATCTACAAAAAATTCGTTCTTCGGGTCATGGCAGCTAGGAGTCCAAGTGTTCGT 240
Query 241 CTTCGAAAAGCTCTTTATAGAAAGGATTTCAGTGTTGATCCTAAATGCCCCAATACCGTT 300
||||||||||||||||||||||||||||||||||||||||||||||| || || || |||
Sbjct 241 CTTCGAAAAGCTCTTTATAGAAAGGATTTCAGTGTTGATCCTAAATGTCCTAACACGGTT 300
Query 301 CCTGCAAAGCCCTCGAGATCACGGGTGTCTAGATTGGCTATGATCTCATCAATTCCTCAG 360
|||||||||||||| |||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct 301 CCTGCAAAGCCCTCAAGATCACGTGTGTCTAAATTGGCTATGATCTCATCGATTCCTCAG 360
Query 361 AAGGGTAATGGCAATATCAGGTCAAAAGAAGTAAAAGTAGTTTCCACAAATAAGAATGTG 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGGGTAATGGTAATATCAGGTCAAAAGAAGTAAAAGTAGTTTCCACAAATAAGAATGTG 420
Query 421 ACTCCAAAGGAAAAGGCAAAAGGAAAAGAGTCATCAGTGATCTCATCAGTTCCTAAGAAG 480
|||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 421 ACTCCAAAGGCAAAGGCAAAAGGAAAAGAGTCAGCAGTGATCTCATCAGTTCCTCAGAAG 480
Query 481 GCATTAACTGAGAGGAAGAAGCAAATTCAGAGTCCAGCAGCTTTTAGGAGTGTACAGAAT 540
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 481 GCATTAACTGAGAGGAAGAAGCAAATGCAGAGCCCAGCAGCTTTTAGAAGTGTACAGAAT 540
Query 541 CCGAGAAATGCAACAGTCAAGGTGTCTGAAAACAGAGTTGTTGCAAAGGCTTTGGTGTTT 600
||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 541 CCGAGAAATGCAACAATCAAGGTGTCGGAAAACAGAGTTGTTGCAAAGGCTTTAGTGTTT 600
Query 601 CAATCACCAAAGAAATTGGTGAAACTGAAGAGATCTGTGGAGCTTAGTTCTTCGGTGAAG 660
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 CAATCTCCAAAGAAGTTGGTGAAACTGAAGAGATCTGTGGAGCTTAGTTCCTCGGTGAAG 660
Query 661 AAGTTGTGTAATGGGATGAGGAAGCTTGAGATTGATAACAAAAGAAATGGTTTAGGGATT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 661 AAGTTGTGTAATGGGATGAGGAAGCTTGAGATTGATAACAAAAGAAATGGTTTGGGGGTT 720
Query 721 AATCATAAGGTTGTGAGTTCAGC-TCCATCTAGAAGACCGCTAAAAACACGAGAGGTGAA 779
||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 721 AATCATAAGGTTGTGAGTTCAGCGT-CATCTAGAAGACCTCTAAAAACACGAGAGGTGAA 779
Query 780 GAGCCGAGTGTTTGATTATTCTGTGCGGTCACAGAAACAGATTGATGAAAAAGACAAAGG 839
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 780 GAGCCGAGTGTTTG---ATTCTCTGCGGTCACAGAAACAGATTGATCAAAAAGACAAAGG 836
Query 840 TGTCAGTACTTTGAAGAAGAGGATCAAGAAAAAGGAAGAGCCTGTGCTTTCCTCTGATAC 899
|||||||||||||||||||||| | |||||||||||||| ||||||| |||||||||| |
Sbjct 837 TGTCAGTACTTTGAAGAAGAGGGTTAAGAAAAAGGAAGATCCTGTGCCTTCCTCTGATCC 896
Query 900 TTCT-AAACCTCATGAAGCTAATGGTATGGAACTTGAGAATCAATCTTTGCCAAAGACTG 958
|| | |||||| |||| |||||||||||| | || ||| || |
Sbjct 897 TT-TGAAACCTTATGATTCTAATGGTATGG-A----AG---------TTG----AG---G 934
Query 959 AAAAAACTAGTGGAGATGAAGAGCTCTTGGTTGAAAACAAATCTGAAGAATTGTCAGACC 1018
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 ATAAAACTAGTAGAGATGAAGAGCTCTTGGTTGAAAACAAATCTGAAGAATTGTCAGACA 994
Query 1019 CATCGAAGGCTAATATGGACGATCAACTACAGGCCAGAGAAGATCTTGCTGTAATAAAGG 1078
||||||||||||| ||| || |||| || |||||||||||||||| ||||||||||||||
Sbjct 995 CATCGAAGGCTAACATGAACAATCAGCTCCAGGCCAGAGAAGATCCTGCTGTAATAAAGG 1054
Query 1079 AGAGTGGACTGGCTACACCAAAGCAATATCAAATTGCAGAGATGGAAGAAAAGGAGAA-T 1137
|||||||||| |||||| || || |||||||||| ||||||| ||||||||||| || |
Sbjct 1055 AGAGTGGACTTGCTACATCACAGAAATATCAAATCACAGAGATTGAAGAAAAGGA-AAGT 1113
Query 1138 GCATTAGCTTTGGAGTGCGAGGACAAAGAGAATGCTACTATTG-CAGCGGCTGTCGATAA 1196
|||||||||| |||||||||||||||||||||||||| ||||| | |||||| |||||||
Sbjct 1114 GCATTAGCTTCGGAGTGCGAGGACAAAGAGAATGCTAATATTGTC-GCGGCTATCGATAA 1172
Query 1197 AGAAGATATTCCTCTAATTAAGGTGAGTGGACTGGATAAAGCAAAGCAATGTGAGACTGT 1256
|||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1173 AGAAGATATTGCTGTAATTAAGGTGAGTGGACTAGATAAAGCAAAGCAATGTGAGACTGT 1232
Query 1257 GGAGATTGAAGACAAGGAAAATGCATTACCATTGGAGTGT--G-AGAAAGAAAATGCTAC 1313
||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 1233 GGAGATTGAAGACAAGGAAAATGCATTGCCATTGGAGTGTGAGAAGAAAGAAAATGCTAC 1292
Query 1314 TAATGCAACAGCTGTCGATAGAGAAGGCGATGATAAGGAAAATTCTTCAGCCTTGGACAA 1373
||||||||| | ||| ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1293 TAATGCAACGGATGTTGATAGGGAA---GATGATAAGGAAAATTCTTCAGCCTTGGACAA 1349
Query 1374 TAACAGAAAAGTCGACCAAGCCACCTATCCTCTGTTGAAAAAGAAAGTTTTTGGCAAGAA 1433
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1350 TAACAGAAATCTCGACCAAGCCACCTATCCTCTGTTGAAAAAGAAAGTCTTTGGCAAGAA 1409
Query 1434 AGAAATTTGTAAAACTACTCAAAAGGTTATGACAGTAGCAGACAAGTGTTTCAATGGCAA 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 AGAAATTTGTAAAACTACTCAAAAGGTTATGACAGTAGCAGACAAGTGTTTCAATGGCAA 1469
Query 1494 GACTGTTTCAGCTGATACCCGTGTCAAGTATACAAAACCTAAGCTCACGAATCCAAAGCC 1553
||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1470 GACTGTTTCGGCTGGTACCCGTGTCAAGTATACAAAACCCAAGCTCACGAATCCAAAGCC 1529
Query 1554 TTTTCGACTTAGAACCGATGAAAGAGGAATTCTTAAGGAAGCAAATACAGAGAAGAAACC 1613
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1530 TTTTCGACTTAGAACCGATGAAAGACAAATTCTCAAGGAAGCAAATACAGAGAAGAAACC 1589
Query 1614 ACAATGTACTATTGCCAAAGAAGAAACTGCAAGCACTCTTGGGTTCCATGGTGAAAACTT 1673
|||||||||| ||||||||||||| ||||| |||| | ||||||||||||||||||||
Sbjct 1590 ACAATGTACTCTTGCCAAAGAAGACACTGCCAGCATTAGGGGGTTCCATGGTGAAAACTT 1649
Query 1674 GGGTCCAAAACATCAGCAAGTTCGAGTAAGTTCTTTCTGTAGCATATTGAT-ACATGTTC 1732
||||||||| ||||| | ||||||||||||||||||||||||||||||||| | |||||
Sbjct 1650 GGGTCCAAATCATCAACCAGTTCGAGTAAGTTCTTTCTGTAGCATATTGATGTC-TGTTC 1708
Query 1733 ATCGTTTGGAGAAGAACGCGA-CTTCCCGGTTAAAAGCTTCAAAAGGAACATCCACAAAA 1791
||||||||||||||||| | | ||||||||||||||||||||| ||||||||||||||||
Sbjct 1709 ATCGTTTGGAGAAGAACTC-AGCTTCCCGGTTAAAAGCTTCAAGAGGAACATCCACAAAA 1767
Query 1792 CTTGTCTCTGAAAATATGGTGGATTGCAAGAGGGTTGCATTAGGTAGAAAGAAGCAAGTG 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 CTTGTCTCTGAAAATATGGTGGATTGCAAGAGGGTTGCATTAGGTAGAAAGAAGCAAGTG 1827
Query 1852 GCAAGGAAAAGAATCGAAACCGCGGAGCAAGCCTCACAGATGAATGGAGAATCTAAAGAA 1911
|||| ||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1828 GCAAATAAACGAATCGAAACCGCGGAGCAAGCCTCGCAGATGAATGGAGGATCTAAAGAA 1887
Query 1912 GTTGCAATCATCAACAAACCTTCTGTTTGTGTTGTTGCTTCAGGGGAGAAAAGACCTGTA 1971
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1888 GTTCCAATCATCAACAAACCTTCTGTTTGTGTTGTTGCTTCGGGGGAGAAAAGACCTGTA 1947
Query 1972 ACTGTCCCAAAGGGACCAAACTTCCATTGTATTCATGTCCCTAAGAGCTGTACAAAGAGA 2031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1948 ACTGTCCCAAAGGGACCAAACTTCCATTGTATTCATGTCCCTAAGAGCTGTACAAAGAGA 2007
Query 2032 GTGGCAT-GACAAGTCTAAGATCGGCTTTTTAAATATATCTGCAGTTTGATTCACACGAG 2090
||||||| | |||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 2008 GTGGCATCGG-AAGTCTAAGATCGGGTTTTTAAATATATCTGCAGTTTAATTCACACGAG 2066
Query 2091 TCTTGTAAGTTTGGTTGGATCTTTGAGAATTAACAGAAGTGAGATTGTTTTGGTGTGTAT 2150
||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 2067 TCTTGTAAGTTTGGTTG-ATCTTTGAGAATTAACAGAAGTGAGATTATTTTGG-GTGTAT 2124
Query 2151 AAAACACTTGCTCAGTTTCCAGATTGATCAATACAAAAATTCTTT 2195
|||||| ||||||| |||||||||| |||| |||||||||| |||
Sbjct 2125 AAAACATTTGCTCAATTTCCAGATTAATCATTACAAAAATTGTTT 2169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108884982105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5