BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493178
Length=2219
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16990.2 | Symbols: RLM3 | disease resistance protein (TIR-N... 2037 0.0
AT4G16900.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 459 7e-128
> AT4G16990.2 | Symbols: RLM3 | disease resistance protein (TIR-NBS
class), putative | chr4:9560135-9565454 FORWARD LENGTH=2640
Length=2640
Score = 2037 bits (1103), Expect = 0.0
Identities = 1362/1483 (92%), Gaps = 33/1483 (2%)
Strand=Plus/Plus
Query 44 GAGATACGATGTTTTCCCAAACTTCAGAGGGGAAGATGTCCGCCAATCATTAATCAGCCA 103
||| |||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct 41 GAGCTACGATGTTTTCCCCAACTTCAGAGGGGAAGATGTCCGCCACTCATTAGTCAGCCA 100
Query 104 TCTTCGTAAGGAACTTGATGGCAAATT-AGTCAATACATTCAACGACACCAGGATCGAAA 162
|||||||||||||||||| ||||||| | |||||||||||||||||| |||||||||||
Sbjct 101 CCTTCGTAAGGAACTTGATCGCAAATTCA-TCAATACATTCAACGACAACAGGATCGAAA 159
Query 163 GAAGCCGCAAAATAAACCCAGAGCTTTTATTGGCGATAGAAGGGTCTAGGATCTCACTTG 222
||||||||||||||| ||||||||| |||||||| |||||| || |||||||||||||
Sbjct 160 GAAGCCGCAAAATAACCCCAGAGCTGTTATTGGCTATAGAAAACTCAAGGATCTCACTTG 219
Query 223 TCGTCTTCTCTAAGAACTATGCTTCTTCCACGTGGTGCTAAGATGAATTGGTGAAGATCC 282
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 220 TCGTCTTCTCTAAAAACTATGCTTCTTCCACGTGGTGCTTAGATGAATTGGTGAAGATCC 279
Query 283 AAGAGTGCCATGAGCAGTTGGATCAAATGGTGATTCCTATTTTCTACAACGTAGATCCTT 342
|||||||| ||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 280 AAGAGTGCTATGAGAAATTGGATCAAATGGTGATTCCTATTTTCTACAAAGTAGATCCTT 339
Query 343 CTCATGTTAGAAAACAGACCGGAGAGTTTGGTAAGGTCTTTGTAGAGACCTGCAAGGGCA 402
||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct 340 CTCATGTTAGAAAACAGACCGGAGAGTTTGGCATGGTCTTTGGGGAGACCTGCAAGGGCA 399
Query 403 GAACAGAGAATGAGAAGCGAAAATGGATGCGAGCTCTAACAGAGGTAGCAAATCTAGCCG 462
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 400 GAACAGAGAATGAGAAGCGAAAATGGATGCGAGCTCTAGCAGAGGTAGCACATCTAGCCG 459
Query 463 GTGAAGATCTTCGGAATTGGCGTAGCGAAGCAGAAATGCTTGAAAACATTGCCAAAGATG 522
| |||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 460 GAGAAGATCTTCGGAACTGGCGTAGCGAAGCAGAAATGCTTGAAAATATCGCCAAGGATG 519
Query 523 TTTTAAACAAACTTATTACCCC-ATCAGATAATTTCAGTGACTTCGTCGGGATTGGAGCT 581
||| ||||||||| || |||| |||| ||||||||||||||||||||||||||| ||||
Sbjct 520 TTTCAAACAAACTC-TTCCCCCCATCAAATAATTTCAGTGACTTCGTCGGGATTGAAGCT 578
Query 582 CATATAGAGACATTGATATCAATGTTGCGCTTCGACTC-AGAGAAAGCGCGAATGATAGG 640
||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 579 CATATAGAGGCATTGATATCAATGTTGCGCTTCGACTCCA-AGAAAGCGCGAATGATAGG 637
Query 641 GATTTGTGGGCCTTCCGAAACTGGTAAGACTACCATAGGAAGAGCTCTATACAGCAAAAT 700
||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| | |
Sbjct 638 GATTTGTGGGCCTTCTGAAACTGGTAAGACTACTATAGGAAGAGCTTTATACAGCAGACT 697
Query 701 CAAAAGCCACTTCCACCATCGGGCTTTCGTAGCATACAAGAGAACAATGCCGAGCGATTA 760
||||||| |||||||||||||||||||||||||||| ||||||| ||| | |||||| ||
Sbjct 698 CAAAAGCGACTTCCACCATCGGGCTTTCGTAGCATATAAGAGAAAAATACGGAGCGACTA 757
Query 761 TGACCAGAAGTTGTATTGGGAAGAACAATTTCTATCAGAAATTCTTTGTCAAAAGGATAT 820
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 758 TGACCAGAAGCTGTATTGGGAAGAACAATTTCTATCAGAAATTCTTTGTCAGAAGGATAT 817
Query 821 AAAGATAGAGGAATGTGGTGTGGTGGAACAACGACTAAAGCACAAGAAAGTTCTTATTGT 880
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 818 AAAGATAGAGGAATGTGGTGCGGTGGAACAACGACTAAAGCACACGAAAGTTCTTATTGT 877
Query 881 TCTTGATGATGTCGATGATATTGAGCTACTACAAACGTTGGTAGGACGAATCAGATGGTT 940
|||||||||||| |||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 878 TCTTGATGATGTTGATGATATAGAGCTACTAAAAACGTTGGTAGGACGTATCAGATGGTT 937
Query 941 TGGATCTGAGAGCAAAATTGTTGTGATTACTaaaaaaaGGGAACTTCTCAAAGCTCACAA 1000
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 938 TGGATCTGAGAGCAAAATTGTTGTGATTACTCAAAAAAGGGAACTTCTCAAGGCTCACAA 997
Query 1001 GATTGCACATGTTTATGAAGTGGAATTCCCATCAGAAGAAATGGCTCATCAAATGTTTTG 1060
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 998 CATTGCACATGTTTATGAAGTGGGATTCCCATCAGAAGAACTGGCTCATCAAATGTTTTG 1057
Query 1061 TCGATATGCTTTTGGGAAAAACTCCCCACCTCATGGTTTCAGCGAGCTTGCATTTGAAGC 1120
|||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||
Sbjct 1058 TCGATATGCTTTTGGGAAAAACTCTCCACCTCATGGTTTCAACGAGCTTGCAGATGAAGC 1117
Query 1121 TGCAAAGCTTGCCGGTAATCGTCCTAAAGCTCTGAAGCACTTTGGCTCGTCTTTTAGAAG 1180
||||||| ||||||||||||||||||||||||| ||| || |||| ||||||||||||||
Sbjct 1118 TGCAAAGATTGCCGGTAATCGTCCTAAAGCTCTCAAGTACGTTGGTTCGTCTTTTAGAAG 1177
Query 1181 GA-TATTGGATAAGGAAGAGTGGGTGAAGATTCTATCGGTACT-C--T-GTAATGAGAAT 1235
| || | | |||||| | ||||||||||| ||||||| | | | | |||||| ||||
Sbjct 1178 -ACTA--G-ACAAGGAACAATGGGTGAAGATGCTATCGG-AGTTCCGTAGTAATGGGAAT 1232
Query 1236 AAACTAAAAATCAGCTATGATGGGTTAGATGGCAAAGGTCAAGGTTACATTGCGTGTTTA 1295
|||||||||||||||||||||| ||||||||| |||||||||| |||| |||||||||||
Sbjct 1233 AAACTAAAAATCAGCTATGATGAGTTAGATGGTAAAGGTCAAGATTACGTTGCGTGTTTA 1292
Query 1296 ACCAATG-T-----------G---AAGGCAGAGTGGATCCACTTGGCACTAGGCGTGTCT 1340
||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 1293 ACCAATGGTTCAAATTCCCAGGTGAAGGCAGAGTGGATCCACTTGGCACTAGGCGTGTCT 1352
Query 1341 ATATTACTTAATATCCGCAGTGACGGAACGACATTTCTCAAACATTTGAGCTACAATCGA 1400
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1353 ATATTACTTAACATCCGCAGTGACGGAACGACAATTCTCAAACATTTGAGCTACAATCGA 1412
Query 1401 AGCGTGGCGCAACAAGCAAAAATATGGTGGTACGAGAATTGTG-AAAGAGTGTACAAGAA 1459
||| |||||||||||||||||||||||||||| || |||| || ||||||||| ||||||
Sbjct 1413 AGCATGGCGCAACAAGCAAAAATATGGTGGTATGAAAATT-TGGAAAGAGTGTGCAAGAA 1471
Query 1460 GTACAATATATGTGGCATAGATAGCTCAATTCATGGTGGTGGT 1502
||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1472 GTACAATATATGTGGCATAGATAGCTCAACTGATGGTGGTGGT 1514
Score = 1029 bits (557), Expect = 0.0
Identities = 749/837 (89%), Gaps = 31/837 (4%)
Strand=Plus/Plus
Query 1409 GCAACAAGCAAAAATATGGTGGTAC-GAGAATTGTGAAAGAGTGTACAAG-A--AGTACA 1464
||| || || |||| ||||||| | ||||||||||||| ||||||| || | | |||
Sbjct 1745 GCACCACGCCAAAACATGGTGG-CCGGAGAATTGTGAAAAAGTGTACGAGAACCACAACA 1803
Query 1465 ATATATGTGGCATAGATAGCTCAATT--C-ATGGTG----G--T---GG--TAAG-AAAG 1509
| |||| |||||||||||| |||||| | ||||| | | || ||| ||||
Sbjct 1804 ACATATATGGCATAGATAGATCAATTGACGGTGGTGATAAGTTTGAGGGAAAAAGTAAAG 1863
Query 1510 TTTGTGACGGTGAGTTAGACGGCAAAGATCAAGGTTCAACGTATGGACAAAGTTCAAATT 1569
|| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1864 TTAGTGACGGTGGGTTAGACGGCAAAGATCAAGGTTCAATGTATGGACAAAGTTCAAATT 1923
Query 1570 CTGAGCTTCAAATAAACATGGACGCAAG-CAATAGGAGATATGAACCTGTGAGTGAGACG 1628
| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |
Sbjct 1924 CCGAGCTTCAAATAAACATGGACGC-AGACAATAGGAGATGTGAACCTGTGAGTGAGATG 1982
Query 1629 CTTTTCAAAAATTACGATGCGTATTTGCCGAATGGTTTAACGGATGGAAACTGTTCAAAT 1688
||||||||||||||| ||| || || ||| ||||||||||| |||| |||||||||||||
Sbjct 1983 CTTTTCAAAAATTACAATGTGTGTTCGCCTAATGGTTTAACCGATGTAAACTGTTCAAAT 2042
Query 1689 ACCCAGCCTCAAAGAAAATTGGACGCAAGCCTAAAGAAAGACAAAATTGTGCATGAGTGG 1748
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2043 CCCCAGTCTCAAAGAAAATTGGACGCAAGCCTAAAGAAAGACAAAATTGTGCATGAGTGG 2102
Query 1749 ATTCGAACCGGTAGTGGCTTCTCTTTTGATTTTCAGGGCCCAAATTCTATAGTGAGTGCT 1808
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 2103 ATTCGAACCGGTAGTGGCTTCTTTTTTGATTTTCAGGGCCCAAAATCTATAGTGAGTGCT 2162
Query 1809 GCTCAATTGGAGGAGAAAAAGATCGAGTG-TG-GAG-AAGGCGTGTATATAACACTTGGC 1865
|||||| |||| |||||||| |||||| || || |||| ||||||||||||||||||
Sbjct 2163 GCTCAAGTGGACGAGAAAAATTTCGAGTACTGTGAACAAGGTGTGTATATAACACTTGGC 2222
Query 1866 AGGCTCAGTGGCGGAATTATAGTTCTCAAACATTTGGAGTTCAGCCGAAGAGTGGCGCAA 1925
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2223 ATCCTCAGTGGCGGAATTATAGTTCTCAAACATTTGGAGTTCAGCCGAAGAATGGCGCAA 2282
Query 1926 CAAGCAAAAGTTTGGTGGTCGGAAAATTGGATAAAAGTGTACGAGGAGCACAACATCTGT 1985
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 2283 CAAGCAAAAGTTTGGTGGTCGGAAAATTGGATAAAAGTGTACCAGGAGCACAACATATGT 2342
Query 1986 GGCATAGATAAATCATTTGATGGTAGGTTTGATGATAGACGTGTCATTTGTCAATTAAGA 2045
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2343 GGCATAGATAAATCATTTGATGGTAGGTTTGATGATAGACGTGTCATTCGTCAATTAAGA 2402
Query 2046 CCAAACTGAAGCCCGGCCTGGTCCTTA-AAATAGTCAGGACTTGAGCTATATACTTAAGC 2104
|||||||||||| |||||||| |||| ||| ||||||||||||||||| ||||||||||
Sbjct 2403 CCAAACTGAAGCACGGCCTGGCCCTTGTAAA-AGTCAGGACTTGAGCTAGATACTTAAGC 2461
Query 2105 CTAAA-AGCT-TGTCTGCCCTAAGTCTGGTCAGGTTAGCCCGAAATTGTCGAAATCTGTT 2162
| || || | ||| || | ||||||||||| ||||||| ||||||||||||||||||||
Sbjct 2462 C-AAGCAGATCTGTTTGGC-TAAGTCTGGTCGGGTTAGCGCGAAATTGTCGAAATCTGTT 2519
Query 2163 TAATAATTGCATTTAGTGCAAGTCTTTTATTTGTACTTCATGGCTTTAATACATTAA 2219
||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 2520 TAATAATTGCATTCAGTGCAAGTCTTTAATTTGTACTTCATGGCTTTAATACACTAA 2576
> AT4G16900.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr4:9511859-9516541 REVERSE LENGTH=3517
Length=3517
Score = 459 bits (248), Expect = 7e-128
Identities = 870/1158 (75%), Gaps = 92/1158 (8%)
Strand=Plus/Plus
Query 25 cttcatcttctCGTTGCTGGAGATACGATGTTTTCCCAAACTTCAGAGGGGAAGATGTCC 84
|||| |||||| | || ||||||||||||||||||||| |||||| |||| |||||| |
Sbjct 11 CTTCTTCTTCTTGCAGCCGGAGATACGATGTTTTCCCAAGCTTCAGTGGGGTAGATGTTC 70
Query 85 GCCAA-TCATTAATCAGCCATCT--TCGTAAGGAAC-TT-GATGGCAAATTAGTCAATAC 139
| ||| | || ||||| |||| ||| ||| | || || ||| || | |||||||
Sbjct 71 G-CAAGACGTTCCTCAGCAATCTACTCG--AGG--CGTTCGACCGCAGATCAATCAATAC 125
Query 140 ATTCAACGACACCA-GG-ATCGAAAGAAGCCGCAAAATAAACCCAGAGCTTTTATTGGCG 197
|||| | | | || || |||||| ||||||| | |||| ||| ||||| ||| |||
Sbjct 126 ATTC-ATG-GATCATGGCATCGAACGAAGCCGTACAATAGCCCCTGAGCTAATATCAGCG 183
Query 198 A-TAGAAG-GGTCTAGGATCTCACTTGTCG-TCTTCTCTAAGAACTATGCTTCTTCCACG 254
| ||| || | | ||||||||| | || | ||||||||||||||||||||||||||||
Sbjct 184 ATTAG-AGAAG-CAAGGATCTCAATCGT-GATCTTCTCTAAGAACTATGCTTCTTCCACT 240
Query 255 TGGTGCTAAGATGAATTGGT-GAAGATCCA-AGAGT-GCCATGA--GCAGTTGGA-TCAA 308
||||||| ||||||||||| || |||||| | | | || | | | | |||| ||||
Sbjct 241 TGGTGCTTGGATGAATTGGTTGA-GATCCACA-A-TCGCT-TAAATG-A-TTGGGGTCAA 294
Query 309 ATGGTGATTCCTA-TTTTCTACAACGTAGATCCTTCTCATGTTAGAAAACAGACCGGAGA 367
|||||||| | | |||| ||| |||| |||||||| | ||||||||||||||||| ||
Sbjct 295 TTGGTGATTTC-AGTTTTTTACGACGTTGATCCTTCGGAAGTTAGAAAACAGACCGGCGA 353
Query 368 GTTTGGTAAGGTCTTTGTAGAGACCTGCAAGGGCAGAACA-GAGAATGAGAAGCGAAA-A 425
||||| | || ||| | |||| ||| ||| || || | ||| || |||| | ||| |
Sbjct 354 ATTTGGCGATGTTTTTAAAAAGACATGCGAGGACA-AAGAAGAGGATCAGAAAC-AAAGA 411
Query 426 TGGATGCGAGCTCTAACAGAGGTAGCAAATCTAGCCGGTGAAGATCTTCGGAATTGGCGT 485
||||||| ||||||| ||| || ||||| ||||||| ||||||||||| || ||| |
Sbjct 412 TGGATGCAAGCTCTAGTAGACATAACAAATATAGCCGGAGAAGATCTTCGAAACGGGCCT 471
Query 486 AGCGAAGCAGAAATGCTTGAAAACATTGCCAAAGATGTTTTAAACAAACTTATTACCCCA 545
|| ||||||| ||| ||| ||| || || || ||||||| || || |||||| | |||
Sbjct 472 AGTGAAGCAGCCATGGTTGTAAAGATAGCTAATGATGTTTCGAATAAGCTTATTTCACCA 531
Query 546 TCAGA-TAATTTCAGTGACTTCGTCGGGATTGGAGCTCATATAGAGACATTGATAT-CAA 603
|| || | ||| | || |||||||| |||| ||||||| ||||| || ||| || |||
Sbjct 532 TC-GAATTCTTTTGGCGATTTCGTCGGAATTGAAGCTCATTTAGAGGCAATGA-ATTCAA 589
Query 604 TGTTGCGCTTCGACTC-AGAGAAAGCGCGAATGATAGGGATTTGTGGGCCTTCCGAAACT 662
| ||| |||| || || | || |||| ||||| | |||||||| |||||||| | | |
Sbjct 590 TATTGTGCTTGGAATCCA-AGGAAGCTAGAATGGTTGGGATTTGGGGGCCTTCAGGGATT 648
Query 663 GGTAAGACTACCATAGGAAGAGCTCTATACAG-CAAAATCAAAAGCCACTTCCACCATCG 721
||||||| ||||||||||| |||||||||||| ||| || |||| |||||| ||
Sbjct 649 GGTAAGAGTACCATAGGAAAAGCTCTATACAGTCAAC-TCTTTTGCCAATTCCACTTTCA 707
Query 722 GGCTTTCGTAGCATACAAGAGAACAATGCCGAGCGATTATGACCAGAAGTTGTATTGGGA 781
||||||||| | | || | | || ||| || || || | | || ||||
Sbjct 708 CGCTTTCGTACC-T-CACGT---CTAT----AGC-AT---GA--AGTC-T-GAAT-GGGA 749
Query 782 AGAACA-ATTTCTATCAGAAATTCTTTGTCAAAAGGATATAAAGATAG-AGG-AATGT-- 836
|||| | |||||| ||| |||||||| || || |||||||||||||| ||| || ||
Sbjct 750 AGAA-ATATTTCTGTCAAAAATTCTTGGT-AA--GGATATAAAGATAGGAGGGAA-GTTA 804
Query 837 GGTGTGGTGGAACAAC-GACTAAAGCACAAGAAAGTTCTTATTGTTCTTGATGATGTCGA 895
||||| ||||| ||| | |||| || |||||||||||||| |||||||||||||| ||
Sbjct 805 GGTGTAGTGGAGCAAATGT-TAAATCAGAAGAAAGTTCTTATCGTTCTTGATGATGTGGA 863
Query 896 TGATATTGAGCTACTACAA-ACGTTGGTAGGACGAATC-AGATGGTTTGGATCTGAGA-G 952
|||| ||| | || || || ||||| || ||| | | |||||||||| ||| || |
Sbjct 864 TGATCCAGAGTTTCTT-AAGACCTTGGTGGGG-GAAACTAAATGGTTTGGACCTG-GAAG 920
Query 953 CAAAATTGTTGTGATTACTaaaaaaaGGGAACTTCTCAAAGCTCACAAGATTGCACATGT 1012
|| |||| ||||||| ||| || | | | ||||||| || ||||| | |||| || | |
Sbjct 921 CAGAATTATTGTGATCACTCAAGATATGCAACTTCTTAAGGCTCATGATATTG-ACCTTT 979
Query 1013 T-TATGAAGTGGAA-TTCCCATCAGAAGAAATGGCTCATCAA-ATGTTTTGTCGATATGC 1069
| ||||| ||| || |||||||| ||| | |||| | || ||||| || |||| |||
Sbjct 980 TATATGAGGTG-AAGTTCCCATCTCTAGATCTTGCTCTT-AAGATGTTATGCCGATCTGC 1037
Query 1070 TTTTGGGAAAAACTCCCCACCTCATGGTTTCA-G-CGAGCTTGCATTTGAAGCTGCAAAG 1127
||||||| ||||||| |||||| ||| ||| | | | | || |||||||||| |||| |
Sbjct 1038 TTTTGGGGAAAACTCTCCACCTGATGATTTTAAGGC-A-CTAGCATTTGAAGTTGCAGTG 1095
Query 1128 CTTGCCGGTAATCGTCCT 1145
||||||||||||| ||||
Sbjct 1096 CTTGCCGGTAATCTTCCT 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110089795185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5