BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493180

Length=671
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16980.1 | Symbols:  | arabinogalactan-protein family | chr4...   809    0.0  


> AT4G16980.1 | Symbols:  | arabinogalactan-protein family | chr4:9556978-9557812 
FORWARD LENGTH=835
Length=835

 Score =  809 bits (438),  Expect = 0.0
 Identities = 501/530 (95%), Gaps = 10/530 (2%)
 Strand=Plus/Plus

Query  148  ATGACTCCACCACCCATGCCTATGGCTCCACCACCTATGCCTATGGCTCCACCACCAATG  207
            |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct  308  ATGACTCCACCACCCATGCCCATGACTCCACCACCTATGCCTATGGCTCCACCACCAATG  367

Query  208  TCCATGGCTTCACCACCAATGATGCCAATGACTCCCTCTACAAGCCCAAGCCCATTAACA  267
             |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  368  CCCATGGCTTCACCACCAATGATGCCAATGACTCCATCTACAAGCCCAAGCCCATTAACA  427

Query  268  GTTCCGGATATGCCTTCGCCGCCGATGCCATCCGGAATGGAACCTACACCTTCTCCGGGA  327
            |||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||
Sbjct  428  GTTCCGGATATGCCTTCGCCGCCGATGCCATCCGGAATGGAATCTTCACCTTCTCCAGGA  487

Query  328  CCCATGCCACCGGCAATGGCGGCTTCGCCGGATTCGGGAGCTTTCAATGTTAGAAACAAC  387
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  488  CCCATGCCACCGGCAATGGCGGCTTCGCCGGATTCAGGAGCTTTCAATGTTAGAAACAAC  547

Query  388  GTCGTAGCACTTTCATGCGTTGTTGGAGTTGTTGCAGCTCATTTTCTCTTCGTTTGAGTT  447
            |||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||  |
Sbjct  548  GTCGTAACACTTTCATGCGTTGTTGGAGTTGTTGCAGCCCATTTTCTCCTCGTTTGAAAT  607

Query  448  GATTATTGAATTGGTCAGCCTCG-T--TTT-CTTGTAATTTACTTTCAtttttttC--TC  501
            ||||||||||||||||||||||| |  ||| |||||||||||| ||||||||||||  ||
Sbjct  608  GATTATTGAATTGGTCAGCCTCGATCGTTTTCTTGTAATTTACCTTCATTTTTTTCCCTC  667

Query  502  AAATTATTAGTGTGTTCATCATTTTATTATATTTGAGTTTGTGTTTGATGTACGATTCAA  561
            |||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct  668  AAATTATTAGTG-GT-CATCATTTTATAATATTTGAGTTTGTGTTTGATGTACGATTCAG  725

Query  562  ACATTTGTTTGCATTATGTGCTTAATAAGTTTATCGTTGACTCTAGTTGAAGAGAGACTT  621
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  726  ACATTTGTTTGCATTATGTGCTTAATAAGTTTATCGTTGACTCTACTTGAAGAGAGACTT  785

Query  622  TGTATGTGATGTAAATTTCTTCTTTATCTATTAAACATTGCATTCGTAGT  671
            |||||||||||||||||||||||  ||||||  |||||||||||||||||
Sbjct  786  TGTATGTGATGTAAATTTCTTCT--ATCTATGGAACATTGCATTCGTAGT  833


 Score =  187 bits (101),  Expect = 1e-46
 Identities = 107/110 (97%), Gaps = 0/110 (0%)
 Strand=Plus/Plus

Query  13   tcttcttcctcttcacaagccttcttcttGCTCACATTGTCTATGGTTTTAATACCCTTC  72
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct  116  TCTTCTTTCTCTTCACAAGCCTTCTTCTTGCTCACATTGTCTATGGTTTTAATTCCTTTC  175

Query  73   TCTTTAGCTCAAGCTCCCATGATGGCTCCTTCTGGCTCAATGTCCATGCC  122
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  176  TCTTTAGCTCAAGCTCCCATGATGGCTCCTTCTGGCTCAATGTCCATGCC  225


 Score = 75.0 bits (40),  Expect = 9e-13
 Identities = 42/43 (98%), Gaps = 0/43 (0%)
 Strand=Plus/Plus

Query  129  GATGTCTCCGATGCCAATGATGACTCCACCACCCATGCCTATG  171
            ||||||||||||||||||||||||||||||||| |||||||||
Sbjct  268  GATGTCTCCGATGCCAATGATGACTCCACCACCTATGCCTATG  310



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32451258962


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5