BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493181
Length=2722
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16970.1 | Symbols: | Protein kinase superfamily protein | ... 3718 0.0
AT4G16892.1 | Symbols: | other RNA | chr4:9506322-9508337 REVE... 510 2e-143
AT4G16915.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 111 3e-23
> AT4G16970.1 | Symbols: | Protein kinase superfamily protein
| chr4:9551428-9555784 REVERSE LENGTH=2776
Length=2776
Score = 3718 bits (2013), Expect = 0.0
Identities = 2434/2632 (92%), Gaps = 50/2632 (2%)
Strand=Plus/Plus
Query 1 AGATTCACAGCATTTGCAATGTCAGAAAACTCTGAACCGCGTCAACTCGAGAATTCTACA 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 AGATTCACAGCATTTGCAATGTCAGAAAACTCGGAACCGCGTCAACTCGAGAATTCTACA 60
Query 61 GCCGGAAGAGAGCTCATTGCTCTTGGTCTCACCGTTTCAGACGGCAACGACGCA-CTTAG 119
|||||||||||||||||| ||||| ||| |||| ||||||||||||||||| | ||||
Sbjct 61 GCCGGAAGAGAGCTCATTCCTCTTAGTCCCACCAATTCAGACGGCAACGACG-ACCTTA- 118
Query 120 CCATTATTATCGGCAAGCTTTTGAGTTATGTCGTCCCCTACTATCTGCTGGTCATCCAGA 179
| ||| ||| ||| ||||||||||||| ||||| |||||| ||| |||||||||||||
Sbjct 119 --ACTATCATCTGCATGCTTTTGAGTTATCTCGTCTCCTACTTTCTTCTGGTCATCCAGA 176
Query 180 ATCTGTTATAGATCTTTGTACGAAGTGTACATACTTCCAAGGTTCTCCTAATCTCGTCAA 239
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 177 ATCTGTTATAGATCTTTCTTCAAAGTGTACATACTTCCAAGGTTCTCCTAATCTCGTCAA 236
Query 240 ATTTCTTTGCTCGATCCCTAATTCTCCTATTTCTCTTGCTGGAGATGGCTTCACTGTGAC 299
|| |||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 237 ATATCTTTGCTCGATCCCTAATTCTCCTATTTCCCTTGCCGAAGATGGCTTCACTGTGAC 296
Query 300 TCCCTCGCGTGGGTTTCCCTCCGCTCCGGCTAGTTTCGCCTGTAGTTTAGG-TTTGCCGG 358
|| ||||| || || ||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 297 TCTCTCGCCTGAGTCTCCCTCCGCTCCGGCTAGTTTCGCCTGTAGTTT-GGATTTGCAGG 355
Query 359 AAAATGTTGTGTTAGAACAATTTATGGATCCGAGATCTCCCAAGCTTAAGCATTTGAGAG 418
||||||||||||||||||| ||||||||||||||||||| || ||| ||||||| |||||
Sbjct 356 AAAATGTTGTGTTAGAACAGTTTATGGATCCGAGATCTCTCACGCTAAAGCATTCGAGAG 415
Query 419 AGAATGCGGAACAAGAGGAGCTACCGCTCATGCCATTGTCCAAAAGAAGCCGAAATAATG 478
||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| |||
Sbjct 416 AGAATGCGGAACAAGAGGAGCTAGAGCTCATGCCATTGCCCAAAAGAAGTCGAAATGATG 475
Query 479 GAAACGATGTGAATTACTCTGTAATAGATAGCAGACCTAACGACATCACAACTGTTGCCA 538
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 476 GAAACGATGTGAATTACTCTGTAATAGATAGCAGACCTAACGACATCAGAACTGTTGCCT 535
Query 539 GTGGATCTATGCTTGGGACAATTAGAGCTCTTGAATCCCAAGCTTCGCTTTTGAAGTTAG 598
||||| ||||||||||||| ||| |||||||||||||||||||||| |||| || |||
Sbjct 536 GTGGAACTATGCTTGGGACTATTTTAGCTCTTGAATCCCAAGCTTCGGTTTTCAATTTAA 595
Query 599 GTGCATGTAACCGA-GATATAGTA-GCTTTTGATCGTA-ATCCTCAGCCTTGTCCGCAGA 655
|||||| ||||||| || |||| | ||||||| || | ||| ||||||| |||||| |
Sbjct 596 GTGCATCTAACCGAGGA-ATAG-AGGCTTTTGTTC-AAGATCATCAGCCTGGTCCGC--A 650
Query 656 CTCGAATTTTTGGTTTCGATATTTTGGCCAATGCTTCAGTGGATGTCAATCCTACGCA-G 714
| | | | | |||||||||||||||||||||||||||| ||
Sbjct 651 ---G-A----------C---A---T--CCAATGCTTCAGTGGATGTCAATCCTACACATC 688
Query 715 GGCTTAGAGGAAAGCAAGAACGATTTGCCATTTCCTCAGAAGGATGGATATTGCGAGCAA 774
|| |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| |
Sbjct 689 GG-TTAGAGGAAAGCAAGAACGATTTGCCATCTCCTCAGGAGGATGGATATTACGAGCGA 747
Query 775 CCTGAAATTGGAGATATT-CAAATTGCTGACAAGAAAATATTATTCGAAGAAGGTGATGA 833
||||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||
Sbjct 748 CCTGAAATTGGAGAT-TTCCAAATTGCTGACAACCAAATATTAATCGAAGAAGGTGATGA 806
Query 834 TAAAAACAAGAAAGATCTCTTCCCTAAGGGGGAGATACAAACTCCCTATGTGCAGTCCAA 893
|||||| ||||| ||||||||||||||||| |||||||||||| | |||||||||| |
Sbjct 807 TAAAAATAAGAAGGATCTCTTCCCTAAGGGAGAGATACAAACTGATTCTGTGCAGTCCGA 866
Query 894 TCTTGCTGCCTCATCGACGCCAACAGAAAGTGAGTTAGAACCAGTGCAGATTGTGGAGGA 953
|| | |||||||| || ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 867 TCCCGTTGCCTCATTGATGCCAACAGAAAATGAGTTAGAACCAGTGCAGATTGTGGATGA 926
Query 954 TACTGAAGATTTACTTGTAGAAGATCACACTGAAGACATCTG-TAGCACACCTGTCAGAG 1012
||||||||| |||||||||| |||||||||| ||||||| | |||||| |||| |||||
Sbjct 927 CACTGAAGATCTACTTGTAGATGATCACACTGTAGACATC-GTTAGCACCCCTGACAGAG 985
Query 1013 AGCAGCCGTTGAATCCTTCTGCTAAAGAAGCTAATCAAGATAAATCTTTGGTACAAAAAA 1072
||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 986 AGCTGCCGTTGAAGCCTTCTGCTACAGAAGCTAATCAAGATAAATCTTTGGTACAAAAAA 1045
Query 1073 CTCAGGATCAATGCAAATCT-CCAGGAAACAGCAAAACGTACAGCTGTTCCCCTGAGAAA 1131
||| |||||||||||||| | || |||||||||||||||||||||||||||||||||| |
Sbjct 1046 CTCTGGATCAATGCAAAT-TGCCGGGAAACAGCAAAACGTACAGCTGTTCCCCTGAGATA 1104
Query 1132 AAACATACCAGAAAAAGTAAAACTACCCAGAAGTCGAAGCAGAATGTTAACTCCGTTCGA 1191
||||| ||||||||||||||| || ||||||| |||||||||| ||||| |||||||
Sbjct 1105 AAACACACCAGAAAAAGTAAAGTTATCCAGAAGAGGAAGCAGAATTTTAACACCGTTCGT 1164
Query 1192 CCTAAAGATCAGAAGGATCAGGCAAAGCATAACACAATTCCAGATTTTGATTCTTACACT 1251
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 CTTAAAGATCAGAAGGATCAGGCAAAGCATAACACAATTCCAGATTTTGATTCTTACACT 1224
Query 1252 ATTGTAGAGGAAGAAGGTTCAGGTGGCTACGGAATTGTTTATAAGGCAAAGAGGAAAACT 1311
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1225 ATTGTAGAGGAAGAAGGTTCAGGTGGCTACGGGATTGTTTATAAGGCAACGAGGAAAACT 1284
Query 1312 GATGGAACAGAGTTTGCAATTAAATGCCCTCATGCTGGCGCTCAGAAGTACTATGTTAAT 1371
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct 1285 GATGGAACAGAGTTTGCAATTAAATGCCCTCATGTTGGCGCTCAGAAGTATTATGTGAAT 1344
Query 1372 AATGAAATCAGAATGCTGGAGCGTTTTGGGGGGAAAAACTGTATAATAAAGCATGAAGGC 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 AATGAAATCAGAATGCTGGAGCGTTTTGGGGGGAAAAACTGTATAATAAAGCATGAAGGC 1404
Query 1432 TGTCTCAAGAATGGAGATTCGGATTGCATCATCCTTGAGCACCTTGAACATGACAGACCT 1491
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1405 TGTCTCAAGAATGGAGATTCTGATTGCATCATCCTTGAGCACCTTGAACATGACAGACCT 1464
Query 1492 GATTCATTGAAGAGAGAAATAGACGTGTATCAGCTACAGTGGTACGGCTACTGCATGTTC 1551
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1465 GATTCATTGAAGAGAGAAATAGATGTGTATCAGCTGCAGTGGTACGGCTACTGCATGTTC 1524
Query 1552 AAAGCTCTATCGAGTCTGCATAAGCAGGGTGTTGTTCATAGGGATGTTAAGCCAGGAAAC 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 AAAGCTCTATCGAGTCTGCATAAGCAGGGTGTTGTTCATAGGGATGTTAAGCCAGGAAAC 1584
Query 1612 TTCCTCTTCTCTAGGAAGACAAACAAAGGCTATCTCATTGATTTTAACCTTGCCATGGAT 1671
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1585 TTCCTCTTCTCTAGGAAGACCAACAAAGGCTATCTCATTGATTTTAACCTTGCCATGGAT 1644
Query 1672 TTGCACCAGAAGTACAGGAGAGTAGATAAATCAAAAGCAGCTGCTGGTCTTCCAACCGCC 1731
||||||||||||||||| |||| ||||||||||||||||||| | |||||||| ||||||
Sbjct 1645 TTGCACCAGAAGTACAGAAGAGCAGATAAATCAAAAGCAGCTTCAGGTCTTCCTACCGCC 1704
Query 1732 AGCAAGAAACATCATACACTGGTTAAATCACTCGATGCGACAAACCGAGGGACCAACAAA 1791
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1705 AGCAAGAAACATCATACATTGGTTAAATCACTCGATGCGGTAAACCGAGGGACCAACAAA 1764
Query 1792 TCTTATCAGAAAACTTTAGCGCCTAATAGTCTCAAGAAAGCAGCGGGAAAGACAACAGCT 1851
||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1765 CCTTCTCAGAAAACTTTAGCGCCTAATAGTATCAAGAAAGCAGCGGGAAAGACAAGAGCT 1824
Query 1852 CGGAATGACATGAGCAGATGGGAGAGACTCAATAGCCAAGGGGCAGAAGGGTCTGGCTTA 1911
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1825 CGGAATGACATGACCAGATGGGAGAGACTCAATAGCCAAGGGGCAGAAGGGTCTGGCTTA 1884
Query 1912 ACTTCAGCTAAAGATGTGACCAGCACAAGGAACAACCCTTCAGGTGAAAAGAGGAGAGAG 1971
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1885 ACTTCAGCTAAAGATGTGACCAGCACAAGGAACAACCCTTCAGGTGAAAAGAGAAGAGAG 1944
Query 1972 CCTTTGCCATGTCATGGAAGAAAAGCGCTTTTAGATTTTCTGCAGGAGACAATGTCTGTT 2031
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1945 CCTTTGCCATGTCATGGAAGAAAAGCGCTTTTAGATTTTCTGCAAGAGACAATGTCTGTT 2004
Query 2032 CCAATTCCAAACCATGAAGTATCATCCAAAGCTCCTACGTCTATGAGAAAACGGGTAGCT 2091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2005 CCAATTCCAAACCATGAAGTATCATCCAAAGCTCCTACGTCTATGAGAAAACGGGTAGCT 2064
Query 2092 GCTCTTCCTGGGAAAGCTGAGAAGGAACTTCTTTATCTGACCCCAATGCCACTGCACTCT 2151
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2065 GCTCTTCCAGGGAAAGCTGAGAAGGAACTTCTTTATCTGACCCCAATGCCACTGTGCTCT 2124
Query 2152 GTTAGTCGGCCTGAAGCAGTAGGGAACATAATTCAGAAGAAAGACGGTCCTTGCTCAGGA 2211
||||||||||||||| |||| | ||||| ||||||||||||||||||||||||||
Sbjct 2125 AACGGTCGGCCTGAAGCAG--GGGA-CGTAATTGAGAAGAAAGACGGTCCTTGCTCAGGA 2181
Query 2212 ACCAAAGGCTTCCGAGCTCCAGAGGTTTGCTTCAGATCTTTGCACCAAGGGCCTAAGATA 2271
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2182 ACCAAAGGCTTCCGAGCTCCAGAGGTTTGCTTCAGATCTTTGCACCAAGGACCTAAGATA 2241
Query 2272 GATGTTTGGTCTGCAGGAGTTACTTTGTTATACCTCATAATGGGAAGGACACCTTTCACT 2331
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2242 GACGTGTGGTCTGCGGGAGTTACTTTGTTATACCTCATAATGGGAAGGACACCTTTCACT 2301
Query 2332 GGTGACCCTGAACAGAACATAAAGGACATTGCGCAACTACGAGGCAGTGAAGAATTATGG 2391
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2302 GGTGACCCTGAACAGAACATAAAGGACATTGCACAACTACGAGGCAGTGAAGAATTATGG 2361
Query 2392 GAAGTAGCCAAGCTGCACAACCGTGAATCCTCTTTCCCTGAGGAATTGTACGAGTCAAGG 2451
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 2362 GAAGTAGCCAAGCTGCACAACCGTGAATCCTCTTTCCCTAAGGAATTATACGAGTCAAGG 2421
Query 2452 TACTTGAAGGGGATGGAGTTGAGAAAATGGTGCGAGCTCAACACAAAACGCAGAGAGTTT 2511
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2422 TACTTGAAGGGGATGGAGTTGAGAAAATGGTGCGAACTCAACACAAAACGCAGAGAGTTT 2481
Query 2512 CTAGACGCAATTCCACGGTTGCTCCTTGACCTCGTTGATAGATGTTTAACCGTTAATCCG 2571
||||||| |||||||| | ||| |||||||||||||||| |||||| |||||||| |||
Sbjct 2482 CTAGACGTAATTCCACTATCGCTTCTTGACCTCGTTGATAAATGTTTGACCGTTAACCCG 2541
Query 2572 AGGCTACGAATCAGCGCAGAGGATGCTCT-AAGGCACGACTTCTTCCTTCCA 2622
|||| |||||||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct 2542 AGGCGACGAATCAGCGCAGAGGATGCTCTCAAG-CACGACTTCTTCCATCCA 2592
Score = 106 bits (57), Expect = 1e-21
Identities = 64/67 (96%), Gaps = 2/67 (3%)
Strand=Plus/Plus
Query 2634 GCAGCCTACAGTGGTTGCTGACGCAGTAAGCCACACTCTAAACTAATATTACAATTGTAA 2693
||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 2631 GCAGCCTACAGTGGTTGCTGACGCAGTAAGCCAAACTCTAAACTA-T-TTACAATTGTAA 2688
Query 2694 AAGTAAA 2700
|||||||
Sbjct 2689 AAGTAAA 2695
> AT4G16892.1 | Symbols: | other RNA | chr4:9506322-9508337 REVERSE
LENGTH=1427
Length=1427
Score = 510 bits (276), Expect = 2e-143
Identities = 345/378 (91%), Gaps = 5/378 (1%)
Strand=Plus/Plus
Query 2248 TCTTTGCACCAAGGGCCT-AAGATAGATGTTTGGTCTGCAGGAGTTACTTTGTTATACCT 2306
|||||| ||||||| ||| || | ||| || || ||||| ||||||||||||||||||||
Sbjct 854 TCTTTGGACCAAGGACCTAAAAAAAGACGTGTGTTCTGCGGGAGTTACTTTGTTATACCT 913
Query 2307 CATAATGGGAAGGACACCTTTCACTGGTGACCCTGAACAGAACATAAAGGACATTGCGCA 2366
|||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 914 CATAATGGGAAGGAAAGCTCTCACTGGTGACCCTGAACAGAACATAAAGGACATTGCGCA 973
Query 2367 ACTACGAGGCAGTGAAGAATTATGGGAAGTAGCCAAGCTGCACAACCGTGAATCCTCTTT 2426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 ACTACGAGGCAGTGAAGAATTATGGGAAGTAGCCAAGCTGCACAACCGTGAATCCTCTTT 1033
Query 2427 CCCTGAGGAATTGTACGAGTCAAGGTACTTGAAGGGGATGGAGTTGAGAAAATGGTGCGA 2486
| ||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1034 ACATGAGGAATTGTACAAGTCAAGGTACTTGAAAGGGATGGAGTTGAGAAAATGGTACGA 1093
Query 2487 GCTCAACACAAAACGCA-GAGAGTTTCTAGACGCAATTCCACGGTTGCTCCTTGACCTCG 2545
|||||| ||||||||| | ||||||||||| ||||||||| ||| ||||||||||||||
Sbjct 1094 ACTCAACCCAAAACGCATG-GAGTTTCTAGATGCAATTCCATGGTCGCTCCTTGACCTCG 1152
Query 2546 TTGATAGATGTTTAACCGTTAATCCGAGGCTACGAATCAGCGCAGAGGATGCTCT-AAGG 2604
||||||||||||| |||||||| ||||| | |||||||| |||||||||||||| |||
Sbjct 1153 TTGATAGATGTTTGACCGTTAACCCGAGACGGCGAATCAGTGCAGAGGATGCTCTCAAG- 1211
Query 2605 CACGACTTCTTCCTTCCA 2622
||||||||||||| ||||
Sbjct 1212 CACGACTTCTTCCATCCA 1229
Score = 115 bits (62), Expect = 2e-24
Identities = 73/78 (94%), Gaps = 2/78 (3%)
Strand=Plus/Plus
Query 2624 AATGGCAATCGCAGCCTACAGTGGTTGCTGACGCAGTAAGCC-ACACTCTAAACTAATAT 2682
||| |||||||||||||||||||||||||||| ||||||||| | |||||||||||||||
Sbjct 1278 AAT-GCAATCGCAGCCTACAGTGGTTGCTGACACAGTAAGCCAAAACTCTAAACTAATAT 1336
Query 2683 TACAATTGTAAAAGTAAA 2700
|||||||||||| |||||
Sbjct 1337 TACAATTGTAAATGTAAA 1354
> AT4G16915.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 0 Blast hits
to 0 proteins in 0 species (source: NCBI BLink). | chr4:9516724-9518697
FORWARD LENGTH=711
Length=711
Score = 111 bits (60), Expect = 3e-23
Identities = 69/73 (95%), Gaps = 2/73 (3%)
Strand=Plus/Minus
Query 2445 GTCAAGGTACTTGAAGGGGATGGAGTTGAGAAAATG-GTGCGAGCTCAACACAAAACGCA 2503
|||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||
Sbjct 180 GTCAAGGTACTTGAAGGGGATGGAGTTGAGAAAATGAG-GAGAACTCAACACAAAACGCA 122
Query 2504 GAGAGTTTCTAGA 2516
|||||||||||||
Sbjct 121 GAGAGTTTCTAGA 109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135199911385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5