BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493182
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16850.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1873 0.0
> AT4G16850.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G31130.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:9480076-9481738 FORWARD LENGTH=1242
Length=1242
Score = 1873 bits (1014), Expect = 0.0
Identities = 1167/1241 (94%), Gaps = 9/1241 (1%)
Strand=Plus/Plus
Query 1 ATTTTGACTTGTTCCTTCTCAATGAATTCTTC-CCA--AGCAAGCTTCTTCGAATTTGCT 57
|||||||||||||| |||||||||||| | || | | ||||||||||||||| ||||||
Sbjct 1 ATTTTGACTTGTTCTTTCTCAATGAATCCCTCACAAGCAGCAAGCTTCTTCGATTTTGCT 60
Query 58 CTGACACCACCAATCGGTGTTTTCGAATCTTTCAGGT-TTGTCTCGATGAC-ACAGTCTC 115
|||||||||||||| ||||||||||||||||||||| || | | | ||| ||||||||
Sbjct 61 TTGACACCACCAATCAGTGTTTTCGAATCTTTCAGGTCTTAT-AC-AAGACTACAGTCTC 118
Query 116 TAGAAGCATAATATCGTCTACTCAGTTTTGAGTTTCCCAACAGTGGTTGAAGCTTAACGA 175
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||
Sbjct 119 TAGAAGCATAATATCGTCGACTCTGTTTTGAGTTTCCCAACAGTGGTTGAAGCTTAAGGA 178
Query 176 GGTTCTTATGTGCCTTTTGAAATCATGATTGAGGTAAAGCGACCTGGTTCTTCCACGCGG 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GGTTCTTATGTGCCTTTTGAAATCATGATTGAGGTAAAGCGACCTGGTTCTTCCACGCGG 238
Query 236 ATCACCACTACACTCCTTGATTCTTTCATCATTCTCTTCAGAAACAAACACATCTTAATC 295
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 239 ATCACCACAACACTCCTTGATTCTTTCATGATTCTTTTCAGAAACAAACACATCTTATTA 298
Query 296 CCAGTCTTTGCCTTCATAGCGATCCCTCTCGCAGCCTTACACCTCTCCCTAACTCTTACT 355
||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 299 CCAATCTTTGCTTTCATAGCGATCCCTCTCGCAGCCTTACACCTCTCCTTAACTCTTACC 358
Query 356 TCCTTTCGCCTTAAAAACCATGTCTTTCGTCTGGAAGCCCTAGCTAATGTCGTGCATACA 415
|||||||||||||||||||||||||||||| | |||||| ||||||| || |||||||||
Sbjct 359 TCCTTTCGCCTTAAAAACCATGTCTTTCGTTTAGAAGCCTTAGCTAACGTTGTGCATACA 418
Query 416 CGGTTTGAAGCTAGACAGATCTGGCAAGAGTCTAGAGAAGATGCTGTCTCGCTTTTACAT 475
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 419 CGGTTTGAAGCTAGACAGATTTGGCAAGAGTCTAGAGAAGATGCTGTCTCGCTTTTACAT 478
Query 476 CTCAAATCCCGGTATTTCGTCCCATCATTCATCCTCTCTTGTATCGCTTCGATAACCGTC 535
||||||| |||||||||||||||||| || |||||||| ||||| || || ||||| |||
Sbjct 479 CTCAAATTCCGGTATTTCGTCCCATCCTTTATCCTCTCCTGTATGGCCTCCATAACTGTC 538
Query 536 ATCACATCAACTTCCTTCTCACACCAAGGCCTAAACCCATCTCTGAAGTCGTCATTTGCT 595
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 539 ATCACATCAACTTCCTTCTCACACCAAGGCATAAACCCATCTCTGAAGTCGTCATTTGCT 598
Query 596 TCAGTGAAGTCCTCTTGGATGAGAGTAACAGCAACTTCCATCATCGTCTATGGTCTGCTC 655
||||| ||||| || |||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 599 TCAGTCAAGTCTTCGTGGATGCGAGTAACAGCAACTTCCATCATCGTCTACGGTCTGCTC 658
Query 656 TTCCTCTACTCACCAATTCCCATGTTTCTATCAGCTCTCGTTGGTTACACACCCACATTG 715
|||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 659 TTCCTCTACTCACCAATTTCCATGTTTCTATCAGCTCTCGTTGGTTATACACCTACATTG 718
Query 716 CGTTATCTCATCACAATCTTCAGTCTCGGTGTTGAGGTATACATAATGGCTATAACAGGG 775
|||||||| ||||| ||| || |||||| ||||||||||||||||||||||||||||||
Sbjct 719 CGTTATCTAATCACGATCCTCTTTCTCGGAGTTGAGGTATACATAATGGCTATAACAGGG 778
Query 776 CTTGGCCTTGTCGTCTCTGTATTAGAAGAAAGATACGGTTTTGATGCGATCAAGGAAGGA 835
||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 779 CTTGGGTTTGTCGTCTCTGTATTGGAAGAAAGATACGGTTTTGATGCGATTAAGGAAGGA 838
Query 836 ACCGCCCTGATGAAAGGGAGGAGGATAACAGGGTTGGCTTTGGCGGGTGTATTTGTGTTT 895
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 839 ACCGCTCTGATGAAAGGGAGGAGGATAACAGGGTTGGCCTTGGCGGGTGTATTTGTGTTT 898
Query 896 CTATCGAGTTTCATTGGTCATGGGATGGAGAAGTTGGCGAAGGAGCTAGATATGGACTCG 955
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 899 CTATCGAGTTTCATTGGTCATGGGATGGAGAAGTTGGCGAAGGAGCTAGATATGGACTTG 958
Query 956 AGCTCAGGATCGTGGTGGAGGTCGGTGGTTGTGGCCGGTGGGTGGGACGGGTGGAAGCTG 1015
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGCTCAGGGTCGTGGTGGAGGTCGGTGGTTGTGGCCGGTGGGTGGGACGGGTGGAAGCTG 1018
Query 1016 GTTTGTATGTATGGGGCTGAGGTGGTGCTGAGTTATGTTGTAATCACTGTTTTTTACTGT 1075
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1019 GTTTGTATGTATGGGGCTGAGGTTGTGCTGAGTTATGTTGTAATCACTGTTTTTTACTGT 1078
Query 1076 GAGTGTAGGAAACGCCATGGTAGCAGCGATGCAATTGTTGCTGATGAGGAAGGTCTTGCT 1135
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1079 GAGTGTAGGAAACGCCATGGTAACAGTTATGCAATTGTTGCTGATGAGGAAGGTCTTGCT 1138
Query 1136 ATTTAAAATTAGTTCCAACACTTTTTTGTTGTTGATAATTCTCTTGTGAAAT-TGTGAAA 1194
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1139 ATTTAAAATTAGTTCCAACACTTTTTTGTTGTTGATAATTCTCTTGTGAA-TCTGTGAAA 1197
Query 1195 TACATTTTTGTTTACCAAAATTATGATTTATTCATTGTTTT 1235
|||||||||||||||||| |||||||||||||||||| |||
Sbjct 1198 TACATTTTTGTTTACCAAGATTATGATTTATTCATTGCTTT 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60692458905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5