BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493188
Length=1447
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16830.1 | Symbols: | Hyaluronan / mRNA binding family | ch... 2058 0.0
> AT4G16830.1 | Symbols: | Hyaluronan / mRNA binding family |
chr4:9470385-9472594 FORWARD LENGTH=1590
Length=1590
Score = 2058 bits (1114), Expect = 0.0
Identities = 1344/1448 (93%), Gaps = 44/1448 (3%)
Strand=Plus/Plus
Query 1 CTAATCCAAATTTCCACACATTTGt-ttttca----tt--t-ttt-tCCCCTTATCATTT 51
||| ||||||||||||||||||| | |||||| || | ||| | |||||||||||
Sbjct 3 CTATTCCAAATTTCCACACATTT-TATTTTCATTTCTTAATATTTATTTCCTTATCATTT 61
Query 52 CTTTCTCTCACCAACCAACAAGTTCTCCTCTATACCCATTTCGTCTCCTTCATTTTGACG 111
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 62 CTTTCTCTCACCAACCAACAAGTTCTCCTTTCTACCCATTTCGTCTCCTTCATTTTGACG 121
Query 112 TTTTCTTTAGATCTGTTAAT-A----ATCCATGGCTTGGTCTAGTCACTAGTGGTGTTAT 166
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 122 TTTTCTTTAGATCTGTTAATAATCCCATCCATGGCTTGGTCTAGTCACTAGTGGTGTTAT 181
Query 167 CTCTCTGTGTGGAATAAAAAGCAAGGTTTTTGAATTACTTGGGTTG-TTTAAGGAGATGG 225
||||||||||||||||||||||||||||||| ||| |||||| ||| ||||| || ||||
Sbjct 182 CTCTCTGTGTGGAATAAAAAGCAAGGTTTTTTAATCACTTGGATTGTTTTAA-GATATGG 240
Query 226 CAACTTTGAACCCTTTTGATTTGTTGGATGACGATGCTGAGGATCCGAGCCAGCTCGCTG 285
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 241 CAACTTTGAACCCTTTTGATTTGTTGGATGATGATGCTGAGGATCCAAGCCAGCTCGCTG 300
Query 286 TTTCCATCGACAAGATTGATAAGTCCAAGAAATCTGGACCCGTTTCGGGCTTCCCTGCTA 345
|| ||||||| |||||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 301 TTGCCATCGAGAAGATTGATAAGTCCAAGAAATCTGGACAGGTTTCGAGCTTGCCTGCTA 360
Query 346 AGTCAGCTCCTAAGCTTCCATCGAAGCCACTTCCTCCTGCTCAAGCCGTGAGAGAGGCAA 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTCAGCTCCTAAGCTTCCATCGAAGCCACTTCCTCCTGCTCAAGCCGTGAGAGAGGCAA 420
Query 406 GGAGTGATGCTCCACGTGGTGGTGGTGGAGGCCGTGGAGGATTTAGCCGTGGTCGTGGTG 465
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 GGAGTGATGCTCCAC---GTGGTGGTGGAGGCCGTGGAGGATTTAACCGTGGTCGTGGTG 477
Query 466 GTTACAACCGTGAGGATGGTAATAATGGATATTCAGGAGGATACACTAAACCCTCAGGGG 525
||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 478 GTTACAACCGTGATGATGGTAACAATGGATATTCAGGGGGATACACTAAACCCTCAGGTG 537
Query 526 AAGGAGATATGTCAAAGTCTTCTTACGAGAGGCgtggcggtggtggtggtggtggagggg 585
|||||||| | ||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 538 AAGGAGATGTTTCAAAGTCTTCTTACGAGAGGCGTGGCGGTGGTGGTGCTCCT--CGTGG 595
Query 586 ctcc-t-cgtggttctttccgtggtgaaggtggtggtggtcgtcgtggtggATTCAGCAA 643
||| | ||||| | |||||| | ||||||||||||||||||||||||||||||
Sbjct 596 TTCCTTCCGTGG---TGAAGGTGGTGGACCTGGTGGTGGTCGTCGTGGTGGATTCAGCAA 652
Query 644 TGAGGGTGGTGAAGGAGAACGTCCTCGAAGGGCCTTTGAGCGTCGTAGTGGAACTGGCAG 703
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TGAGGGTGGTGATGGGGAACGTCCTCGAAGGGCCTTTGAGCGTCGTAGTGGAACTGGCAG 712
Query 704 AGGGAGTGACTTCAAGCGTGACGGATCTGGTCGTGGCAATTGGGGAACTCCAGGGGAAGA 763
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 713 AGGGAGTGACTTCAAGCGTGACGGATCTGGTCGTGGGAATTGGGGAACTCCAGGGGAAGA 772
Query 764 GTTAGCTGCTGAGACTGAAGCAGTAGCTGGTGTTGACACTGAGAAGGATGTTGGAGAGAA 823
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 773 GATAGCTGCTGAGACTGAAGCAGTAGCTGGTGTTGAGACTGAGAAGGATGTTGGAGAGAA 832
Query 824 GCTAGCTGTTGATGATGTAGCTGCTGATGCTAACAAGGAGAACACTGTTGTTGAAGAGAA 883
|| ||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||
Sbjct 833 GCCAGCTGTTGATGATGTAGCTGCTGATGCTAACAAGGAGGATACTGTTGTTGAGGAGAA 892
Query 884 AGAGCCTGAGGATAAGGAAATGACTCTTGATGAGTATGAGAAAATACTTGAGGAGAAGAA 943
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 893 AGAGCCTGAGGATAAGGAAATGACTCTTGATGAGTATGAGAAAATACTCGAGGAGAAGAA 952
Query 944 AAAGGCACTTCAATCATTGGCCACCTCTGAGAGGAAAGTTGATACTAAAGTGTTTGAATC 1003
|||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct 953 AAAGGCACTTCAATCATTAACTACCTCTGAGAGGAAAGTTGATACGAAAGTGTTTGAATC 1012
Query 1004 AATGCAACAACTGTCAAACAAGAAGTCTAATGATGAAATCTTCATCAAGCTGGGTTCTGA 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 AATGCAACAACTGTCAAACAAGAAGTCTAATGATGAAATCTTCATCAAGCTGGGTTCTGA 1072
Query 1064 TAAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGCTGTGAGCATCAATGA 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TAAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGCTGTGAGCATCAATGA 1132
Query 1124 GTTTCTGAAGCCAGCAGAGGGTGAGAACTACTACCGAGGAGGAGGTCGTGGTGGCCGCGG 1183
||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||
Sbjct 1133 GTTTCTGAAGCCAGCAGAGGGTGGGAACTACTACCGAGGAGG---TCGTGGTGGCCGTGG 1189
Query 1184 ACGTGGTGGTCGTGGCCGTGGAGGTGTTTCTAGTGGCGAATCTGGTGGTTACCGTAATGA 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 ACGTGGTGGTCGTGGCCGTGGAGGTGTTTCTAGTGGCGAATCTGGTGGTTACCGTAATGA 1249
Query 1244 AGCTGCACCAGCCATTGGAGATGCTGCTCAGTTCCCATCTCTTGGGGGCAAGTAAGATCC 1303
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 AGCTGCACCGGCAATTGGAGATGCTGCTCAGTTCCCATCTCTTGGGGGCAAGTAAGATCC 1309
Query 1304 ATCCAT-A---C-TC-------GTGCATCCTCCTCTAGGATTTTGTGCGAGGATTTACTG 1351
|||||| | | || |||||||||||| |||||||||||||||||||||||||
Sbjct 1310 ATCCATGATAACGTCCACACTCGTGCATCCTCCTTTAGGATTTTGTGCGAGGATTTACTG 1369
Query 1352 TTTACCGGTCTCTCGTTGTCAGATGTAAATTTTTAGGTGTCA--GTCAGTTTTTAGATTT 1409
||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1370 TTTACTGGTCTCTCGTTGTCAGATGTAAATAATTAGGTGTCGTCGTCAGTTTTTAGATTT 1429
Query 1410 TATGCAAA 1417
||||||||
Sbjct 1430 TATGCAAA 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71334974445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5