BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493193
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16800.1 | Symbols: | ATP-dependent caseinolytic (Clp) prot... 1129 0.0
> AT4G16800.1 | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase
family protein | chr4:9454816-9457039 REVERSE
LENGTH=1060
Length=1060
Score = 1129 bits (611), Expect = 0.0
Identities = 670/699 (96%), Gaps = 2/699 (0%)
Strand=Plus/Plus
Query 1 ATGCTGAAAAGTCTCCAAAACGCATTTGAGTCCATACAACAAGATAGTTCAGCTAGGGTT 60
||| ||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||
Sbjct 256 ATGTTGAAAAGTCTCCAGAACGCATTTGAGTCCATACATCAAGATAATTCCGCTAGGGTT 315
Query 61 GTGATGATTAGAAGTCTGGTTCCAGGTGTTTTCTGTGCAGGTGCAGATCTTAAGGTACGT 120
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 316 GTGATGATCAGAAGTCTGGTTCCAGGAGTTTTCTGTGCAGGTGCAGATCTTAAGGAACGT 375
Query 121 AGAACTATGAGTCCATCTGAGGTTCACACATATGTCAACTCGTTGCGCTACATGTTCTCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 AGAACTATGAGTCCATCTGAGGTTCACACATATGTCAACTCGTTGCGCTACATGTTCTCG 435
Query 181 TTCATGGAGGCACTGAGTATCCCAACTATTGCTGCAATAGAAGGTGCAGCACTGGGAGGT 240
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 TTCATTGAGGCACTAAGTATCCCAACTATTGCTGCAATAGAAGGTGCAGCACTGGGAGGT 495
Query 241 GGACTTGAAATGGCTCTTGCTTGTGATCTTCGAATCTGTGGCGAAAATGCAGTATTTGGC 300
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 496 GGACTCGAAATGGCTCTAGCTTGTGATCTTCGAATCTGTGGCGAAAATGCGGTATTTGGC 555
Query 301 TTGCCTGAAACAGGACTCGCTATAATCCCTGGAGCTGGTGGGACACAGAGGCTCTCGAGG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 556 TTGCCTGAAACAGGACTCGCTATAATCCCTGGAGCTGGTGGGACACAGAGGCTCTCAAGG 615
Query 361 CTGGTTGGGAGATCGGTATCAAAGGAACTTATATTCACAGGTCGAAAGATTGATGCAATA 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 616 CTGGTTGGGAGATCGGTATCAAAGGAACTTATATTTACAGGTCGAAAGATTGATGCAATA 675
Query 421 GAAGCTGCAACTAAAGGGCTTGTGAACATTTGTGTTACGGCAGGTGAGGCTCATGAGAAA 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 GAAGCTGCAAATAAAGGGCTTGTGAACATTTGTGTTACGGCAGGTGAGGCTCATGAGAAA 735
Query 481 GCAATTGAAATGGCTCAGCAGATAAATGAAAAAGGTCCATTGGCTATAAAGATGGCGAA- 539
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 736 GCAATTGAAATGGCACAGCAGATAAACGAAAAAGGTCCATTAGCTATAAAGATGGCGAAG 795
Query 540 AAAGGCGATTGATGAAGGAATAGAGACGAATATGGCTTCGGGTTTGGAGGTAGAAGAGAT 599
||| ||||||||||||||||| || || ||||||||||| |||||||| |||||||||||
Sbjct 796 AAA-GCGATTGATGAAGGAATTGAAACAAATATGGCTTCAGGTTTGGAAGTAGAAGAGAT 854
Query 600 GTGTTATCAGAAGCTTCTTAATACTCAAGATCGTCTTGAAGGATTAGCTGCTTTTGCTGA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 GTGTTATCAGAAGCTTCTTAATACTCAAGATCGTCTTGAAGGATTAGCTGCTTTTGCTGA 914
Query 660 GAAGCGTAAGCCTCTTTACACTGGCAAGTGAACACCTTA 698
||||||||||||||| ||||||||||| |||| ||||||
Sbjct 915 GAAGCGTAAGCCTCTGTACACTGGCAATTGAAAACCTTA 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33807580931
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5