BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493194
Length=1511
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16790.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 1179 0.0
> AT4G16790.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr4:9451585-9453254 REVERSE LENGTH=1670
Length=1670
Score = 1179 bits (638), Expect = 0.0
Identities = 717/756 (95%), Gaps = 1/756 (0%)
Strand=Plus/Plus
Query 1 TCTCTCTCTTCTTTCATTACCAAAATAAAGAACCTTTACAAGTTCTCTACACACACTCAC 60
||||||||||||||||| |||||||||||||||||| |||| ||||||||| ||||||||
Sbjct 16 TCTCTCTCTTCTTTCATCACCAAAATAAAGAACCTTGACAACTTCTCTACA-ACACTCAC 74
Query 61 TTTTTCTCTCCAATGGTGGAAGCAAGAAGCTCAAAGAAACCAACCCAATTGGGTAATAAA 120
|||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 75 TTTTTCTCTCTAATGGTGGAAGCAAGAAGCTTGAAGAAACCAATCCAATTGGGTAATAAA 134
Query 121 GAAGATCAAAACCCTAGAAAATTCTACTCTCGATTCCTCTTTAAAGCTCTTATCCTCACC 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 135 GAAGATCAAAACCCTAGAAAATTCTACTCTCGATTCATCTTTAAAGCTCTTATCCTCACC 194
Query 181 CTGCTTTGCGCCGTCGTACCTGTCTTCCTTTCTCAGACGCCGGAGCTTGCTAACCAAACA 240
|||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 195 GTGCTCTGCGCCGTCGTACCTGTCTTCCTTTCTCAGACACCAGAGCTTGCTAACCAAACA 254
Query 241 AGACTCATCGAGCTTCTCCACCTAGTTTTCGTCGGCATCGCCGTCTCTTACGGCCTTTTC 300
|||||| |||||||||||||||| ||||||||||| ||||| ||||||||||| || |||
Sbjct 255 AGACTCCTCGAGCTTCTCCACCTTGTTTTCGTCGGTATCGCAGTCTCTTACGGTCTCTTC 314
Query 301 AGCCGCCGGAACTACGACGGAGGAGGAGGCGGAGGAACAAGCAATAGTGATAACAACAAA 360
|||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 315 AGCCGCAGGAACTACGACGGAGGAGGAGGTGGAGGAACAAGCAATAGTGATCACAACAAA 374
Query 361 GCTGATCATAGTAATAACAATTCGCATTCCTATGTGCCTAAGATTCTTGAAGTATCCTCT 420
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 375 GCTGATCATAGTAATAATAATTCGCATTCATATGTGCCTAAGATTCTTGAAGTATCCTCT 434
Query 421 GTTTTTAACGTGGGTAACGAGAGCGAATCTGAACCGTCCGATGATTCCTCCGGCGATCAA 480
||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 435 GTTTTTAACGTGGGTCACGAGAGTGAATCTGAACCGTCCGATGATTCCTCCGGTGATCAA 494
Query 481 TGTAAGTTTCAGACATGGAAGAACAAGTATCACATGAAAATTCCTGAGGTTGAGACTCGT 540
|||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 495 CGTAAGTTTCAGACATGGAAGAACAAGTACCACATGAAAATCCCCGAGGTTGAGACTCGT 554
Query 541 TTCGTTGAGCGAGTAAGTTCAGAGATCAGAGAGAAGCCTCTGCTTTTGCCGGTTCGGAGC 600
|||||||| ||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 555 TTCGTTGATCGAGTTAGTTCAGAAAACAGAGAGAAGCCTCTGCTTTTGCCGGTTCGGAGC 614
Query 601 TTGAATTATTCTCGTGTTCCTGATTCCTCCGGCGATAATTCCGGTCGATGGGAGAAAGTG 660
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 615 TTGAATTATTCTCGTGTTTCTGATTCTTCCGGCGATAATTCCGGTCGATGGGAGAAAGTG 674
Query 661 AGATCTAAGAGAGAACTTCTGAAGACTCTTGGTGATGATAATAGTGATGTACTTCCTTCT 720
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 675 AGATCTAAGAGAGAACTTCTGAAGACTCTTGGTGATGATAATAGTGATGTGCTTCCTTCT 734
Query 721 CCGATTCCATGGAGGTCAAGATCATCATCATCATCA 756
|||||||||||||||||||||||||| |||||||||
Sbjct 735 CCGATTCCATGGAGGTCAAGATCATCTTCATCATCA 770
Score = 1046 bits (566), Expect = 0.0
Identities = 682/736 (93%), Gaps = 16/736 (2%)
Strand=Plus/Plus
Query 757 GTTAAGAATATGGCTACAGTTGAATCACAGCCGTTGATCAAGAATCTGACACCATCTTCT 816
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 807 GTTAAGAATCTGACTACAGTTGAATCACAGCCGTTGATCAAGAATCTGACACCACCTTCT 866
Query 817 TCTTTCTCTTCTCCAAGAAAGTCGAATCTTTTACCTAATCTCGCATCTCAGTTTCATCCA 876
|||||||||||||||||||||||||||| | ||||||||||||||||| |||| ||||||
Sbjct 867 TCTTTCTCTTCTCCAAGAAAGTCGAATCCTATACCTAATCTCGCATCTGAGTTCCATCCA 926
Query 877 TCTCCGCCACCTCCTCCTCCGCCGCCGCCACCTCTACCGGCGTTTTATAACTCATCGTCG 936
||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 927 TCTCCGCCACCGCCTCCTCCGCCGCCGCCACCACTACCGGCGTTTTATAACTCCTCGTCG 986
Query 937 AGAAAAGATCATCCCGGAATTTACAGGGTTGAGAGGAGAGAATCATCAGTTCACAAGGCG 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 987 AGAAAAGATCATCCCGGAATTTACAGGGTTGAGAGGAGAGAATCATCAGTTCACAAGACG 1046
Query 997 AAATTTGCAGGAGGTGAGTTTCATCCTCCGCCGCCTCCACCACCACCACCTCCGGTGGAA 1056
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1047 AAATTTGCAGGAGGTGAGTTTCATCCTCCGCCGCCTCCTCCTCCACCACCTCCGGTGGAG 1106
Query 1057 TATTATAAGTCAGCTCCGACGAAATTCAGACTAGGCAACGAACGGAGAAAGTCTTCGGAA 1116
|||||||||||| ||||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 1107 TATTATAAGTCACCTCCGACAAAATTCAGACTAAGCAACGAACGGAGAAAGTCCTCGGAG 1166
Query 1117 CAAAAGATGAAAAGAAACTCTCCTAAGAAA-GTGTGGTGGTCTGATCCAATCGTGGAATC 1175
|||||||||||||||||| ||||||| ||| || |||||||| |||||||||||||||||
Sbjct 1167 CAAAAGATGAAAAGAAACGCTCCTAA-AAAGGTTTGGTGGTCCGATCCAATCGTGGAATC 1225
Query 1176 AAAGGAACAAGACACGGA-ACAGAATGATCAAAGAAGTTACTTGGGAAGCAAGGCAACT- 1233
|||||||||||||| || | ||||||||||||||||| |||||||||||||||| | |
Sbjct 1226 GAAGGAACAAGACACAGAGA-AGAATGATCAAAGAAGTAACTTGGGAAGCAAGGC-AGTG 1283
Query 1234 GAGGAATCGGAAG-ATGAAGAACATAGAAGGA-GAGAAAATGAAATTCACGACGAGGTTG 1291
|| ||||| | || ||| |||||| |||| || ||||||||||||| |||||||||||||
Sbjct 1284 GAAGAATCCG-AGAATGGAGAACAGAGAA-GAGGAGAAAATGAAATCCACGACGAGGTTG 1341
Query 1292 AGAAGAAGATAGTAGAGGAAGAAGGAGTTTGTGAGAGCAACAATGGAAGTGACGTGGACA 1351
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 1342 AGAAGAAGATAGTAGAGGAAGAAGGAGTTAGTGAGATCAACAATGGAAGTGACGTGGACA 1401
Query 1352 AGAAGGCAGATGAGTTCATTGCAAAGTTCAGAGAACAGATTAGGTTACAGAGAATCGAGT 1411
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1402 AGAAGGCAGATGAGTTCATTGCAAAGTTCAGAGAACAGATTAGGTTACAAAGAATCGAGT 1461
Query 1412 CTATCAAGAGATCTGCTAATAAGATCTCTGCAAGCTCCTCGAGGTAGAACAT-ATTCAAT 1470
|||||||||||||| |||||||||||||||||| || |||||||||||| | ||| | |
Sbjct 1462 CTATCAAGAGATCTACTAATAAGATCTCTGCAAATTCTTCGAGGTAGAAC-TCATT-A-T 1518
Query 1471 ATT-TTAATAATAGGT 1485
|| ||||||||||||
Sbjct 1519 -TTATTAATAATAGGT 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74547809325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5