BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493196
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16770.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1509 0.0
> AT4G16770.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr4:9434393-9437172
REVERSE LENGTH=1160
Length=1160
Score = 1509 bits (817), Expect = 0.0
Identities = 912/958 (95%), Gaps = 5/958 (1%)
Strand=Plus/Plus
Query 1 AATGGGAACAGCTCTGAAACTTCCAATCATCGATCTTTCTTCGCCGGAGAAGCTCTCTAC 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 34 AATGGGAACAGCTCTGAAACTTCCGATCATCGATCTTTCTTCGCCGGAGAAGCTCTCTAC 93
Query 61 TTCCCGATTGATTCGTCAGGCTTGCTTGGATCATGGATTCTTCTATCTTACAAATCATGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 94 TTCCCGATTGATTCGTCAGGCTTGCTTGGATCATGGATTCTTCTATCTTACGAACCATGG 153
Query 121 TGTTTCGAAAGAGATGATGGAAGGAGTGTTAATGGAGAGCAAGAAACTATTCTCTCTTCC 180
|||||| ||||| ||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 154 CGTTTCGGAAGAGTTGATGGAAGGAGTGTTAATAGAGAGCAAGAAACTATTCTCCCTTCC 213
Query 181 CCTTGATGAGAAGATGGTGATGGCTCGTCGTGGTTTTCGTGGCTACTCACCGTTATACGA 240
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 214 TCTTGATGAGAAGATGGTGATGGCTCGTCATGGTTTTCGTGGTTACTCACCGTTATACGA 273
Query 241 CGAGAAACACGAATCCTCTGCCACCTCCAAAGGTGATTCCAAGGAGATGTTCACTTTTGG 300
|||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 274 CGAGAAACTTGAATCATCTTCCACCTCCATAGGTGATTCCAAGGAGATGTTCACTTTTGG 333
Query 301 ATCTTCAGAAGGAGTTTTGGGACAACTTTACCCTAATGAGTGGCCTCTTGAAGAGCTTTT 360
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 334 ATCTTCAGAAGGAGTTTTGGGTCAACTTTACCCTAACAAGTGGCCTCTTGAAGAGCTTTT 393
Query 361 GCCGCTTTGGAGGCCAACCATGGAACGCTACTATAAAACTGTCATGGATATTGTTGGTAA 420
||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||
Sbjct 394 GCCGCTTTGGAGGCCAACCATGGAATGCTACTATAAAAATGTCATGGAT---GTTGGTAA 450
Query 421 GAAATTGCTTGGCCTAGTGGCTTTGGCATTGAATTTGGAGGAAAACTTCTTTGAAAAAGT 480
||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| ||||
Sbjct 451 GAAATTGTTTGGCCTAGTGGCTTTGGCATTGAATTTAGAGGAAAACTACTTTGAACAAGT 510
Query 481 AGGAGCCTTCAATGATCAAGCAGCAGTTGTTCGTCTCTTACGTTATCCAGGAGAGTTGAA 540
||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| | ||
Sbjct 511 GGGAGCTTTCAATGATCAAGCAGCGGTTGTTCGTCTCTTACGTTATTCAGGAGAATCAAA 570
Query 541 TTCATCTGGAGAAGAAACATGTGGTGCCTCTGCTCATTCAGATTTTGGAATGATAACTCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 TTCATCTGGAGAAGAAACATGTGGTGCCTCTGCTCATTCAGATTTTGGAATGATAACTCT 630
Query 601 TCTTGCAACTGATGGTGTTGCAGGGCTTCAAGTTTGTAGAGATAAAGATAAAGAACCAAA 660
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 TCTTGCAACTGATGGAGTTGCAGGGCTTCAAGTTTGTAGAGATAAAGATAAAGAACCAAA 690
Query 661 AGTTTGGGAAGATGTCGCTGGTATTAAAGGGACTTTTGTTGTCAACATCGGCGACCTTAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 AGTTTGGGAAGATGTCGCTGGTATTAAAGGGACTTTTGTTGTCAACATCGGCGACCTTAT 750
Query 721 GGAAAGATGGACTAATGGTCTTTTCCGATCAACAATGCATAGAGTGGTGTCAGTGGGAAA 780
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 751 GGAAAGATGGACTAATGGTCTTTTCCGATCAACATTGCATAGAGTGGTGTCAGTGGGAAA 810
Query 781 AGAACGTTATTCGGTTGCTGTATTTGTCGATCCAGACCCAAACTGTGTTGTAGAGTGCTT 840
||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 811 GGAACGTTTTTCGGTGGCTGTATTTGTCGATCCAGACCCAAACTGCGTTGTAGAGTGCTT 870
Query 841 GGAGAGCTGTTGTAGTGAAACATCTCCTCCCAGGTTTCCACCGGTCCGGGCCAAAGACTA 900
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||
Sbjct 871 GGAGAGCTGTTGTAGTGAAACATCTCCTCCCAAGTTTCCACCGGTCCGGGCCAGAGATTA 930
Query 901 TTTCCACGAGCGATTCAGTCAAACCCTCGCCTCGTACTCCGGTTCCGACTGATAAATA 958
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 931 TTTCCACGAGCGATTCAGTCAAACCCTCGCCTCGTACTCCGGTTCCGACT-A-AAATA 986
Score = 104 bits (56), Expect = 2e-21
Identities = 83/94 (88%), Gaps = 9/94 (10%)
Strand=Plus/Plus
Query 953 TAAATAAGACATGTGTCAAATGTTTGAGTTTTCACTTTTGCTTGGACATGAAATA---AT 1009
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 1016 TAAATAAGACATGTGTCAAATGTTTGAGTTT-CACTTTTGCGTGGACATGAAATAGCTAT 1074
Query 1010 -A----CCAAAAGGTGATAAAACACTGAAAACAG 1038
| |||||||||||||||||||| |||||||
Sbjct 1075 TATAAACCAAAAGGTGATAAAACACTTAAAACAG 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5