BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493198
Length=1015
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16765.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1397 0.0
> AT4G16765.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr4:9429875-9432437
REVERSE LENGTH=1153
Length=1153
Score = 1397 bits (756), Expect = 0.0
Identities = 938/1019 (92%), Gaps = 39/1019 (4%)
Strand=Plus/Plus
Query 26 GAAATGGGGACGTCGCTTCTACTTCCGATCATCGACCTTTCTTCGCCGGGAAAAATCTCC 85
||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||
Sbjct 119 GAAATGGATACGTCGCTTCTTCTTCCGATCATCGATCTTTCTTCGCCGGAAAAAATCTCC 178
Query 86 ACCGCTCAATTGATTCGTCAGGTTC-TGTCTTGAACATGGATTCTTCTA--T---G-TC- 137
|| |||||||||||||||||| | ||||||||||||||||||||||| | | ||
Sbjct 179 ACTACTCAATTGATTCGTCAGG--CATGTCTTGAACATGGATTCTTCTATGTCAGGATCA 236
Query 138 --AT---G--G-----A----AA-GGGTTTTTGAGGAGAGCAAAGGCTTCTTTAATCTCC 180
|| | | | || |||||||| |||||||||||||||||||||||||||
Sbjct 237 TGATCCGGAAGAATTAATTGGAAGGGGTTTTTAAGGAGAGCAAAGGCTTCTTTAATCTCC 296
Query 181 CACTAGAGGAAAAGATGGCTTTACTCCGCCGTGATTTGCTCGGTTATACTCCATTGTATG 240
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 297 CATTAGAGGAAAAGATGGCTTTACTCCGCCGTGATTTGCTCGGTTATACTCCGTTGTATG 356
Query 241 CTGAGAAACTTGACCCGTCTTTGAGCTCAATAGGTGATTCCAAGGAAAGTTTCTATTTTG 300
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 357 CTGAGAAACTTGACCCGTCCTTGAGCTCCATAGGTGATTCCAAGGAAAGCTTCTATTTTG 416
Query 301 GTTCTTTGGAAGGTGTTCTCGCTCAACGTTACCCAAATCAATGGCCTTCTGAAGGTATCT 360
| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 417 GCTCTTTGGAAGGTGTTCTAGCTCAACGTTACCCTAACCAATGGCCTTCTGAAGGTATCT 476
Query 361 TGCCATCATGGAGGCAAACCATGGAATGTTACTACAAGAATGTCCTGTCCGTGGGTGGAA 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 477 TGCCATCATGGAGGCAAACCATGGAAACTTACTACAAGAATGTCCTGTCCGTGGGTAGAA 536
Query 421 AATTGCTCGGCTTGATTGCCTTGGCATTGGATTTAGATGAGGACTTCTTCGAAAAAGTTG 480
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 537 AATTGCTTGGCTTGATTGCCTTAGCATTGGATTTAGATGAGGACTTCTTCGAAAAAGTTG 596
Query 481 GAGCCTTGAATGATCCTGCAGCAGTTGTTCGCCTCTTACGCTATCCAGGTGAAGTGATTT 540
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 597 GAGCCTTGAATGATCCTACAGCAGTTGTTCGCCTCTTACGATATCCAGGTGAAGTGATTT 656
Query 541 CGTCAGATGTTGAAACATATGGTGCTTCAGCTCACTCAGATTATGGAATGGTCACTCTTC 600
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 657 CGTCAGATGTTGAAACGTATGGTGCCTCAGCTCACTCAGATTATGGAATGGTCACTCTTC 716
Query 601 TTTTGACTGATGGAGTTCCAGGACTTCAGGTTTGTAGAGACAAATCGAAACAACCACACA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTTTGACTGATGGAGTTCCAGGACTTCAGGTTTGTAGAGACAAATCGAAACAACCACACA 776
Query 661 TTTGGGAAGATGTCCCTGCAATTAAAGGGGAGTTTATCGTCAACATTGGTGATATGATGG 720
|||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 777 TTTGGGAAGATGTCCCTGGAATTAAAGGGGCGTTTATAGTCAACATTGGTGATATGATGG 836
Query 721 AGAGGTGGACCAATGGATTGTTCCGGTCTACATTGCACAGAGTGGTGCCGGTGGGAAAAG 780
|||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 837 AGAGATGGACCAATGGATTGTTTCGGTCTACATTGCACAGAGTGATGCCGGTGGGAAAAG 896
Query 781 AACGTTACTCGGTGGTGTTCTTCTTAGATCCCAATCCAGATTGTAATGTGAAATGCTTGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 AACGTTACTCGGTGGTGTTCTTCTTAGATCCCAATCCAGATTGTAATGTGAAATGCTTGG 956
Query 841 AGAGTTGTTGCAGCGAAACTTCTCCCCCAAGATTCCCGCCTATCCTCGCCGGCGACTATA 900
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 957 AGAGTTGTTGCAGCGAAACTTGTCCCCCAAGATTCCCGCCTATTCTCGCCGGCGACTATA 1016
Query 901 TTAAGGAACGTTTCAGGCTAACATACGCCACTTCTTAGATGTT-T-TT-GTTACGAAATG 957
| ||||| |||||||||||||||||||||||||| ||| | || | || || ||||||||
Sbjct 1017 TCAAGGAGCGTTTCAGGCTAACATACGCCACTTCCTAG-TCTTATGTTTGTGACGAAATG 1075
Query 958 TAAGAAAAAA-TAGTGTTCAAAGTTCAAACTTCAACCTACTATAATGTTTAATTAGTGA 1015
|||||||||| ||||||||||| ||| | | | | || | || | ||||||||||||||
Sbjct 1076 TAAGAAAAAAATAGTGTTCAAACTTCTA-CGT-A-CC-A-TA-A-TGTTTAATTAGTGA 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49731805530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5