BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493200
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16750.1 | Symbols: | Integrase-type DNA-binding superfamil... 1212 0.0
AT2G35700.1 | Symbols: ATERF38, ERF38 | ERF family protein 38 |... 302 5e-81
AT5G11590.1 | Symbols: TINY2 | Integrase-type DNA-binding super... 126 3e-28
AT5G25810.1 | Symbols: tny | Integrase-type DNA-binding superfa... 106 4e-22
> AT4G16750.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr4:9420917-9421759 REVERSE LENGTH=843
Length=843
Score = 1212 bits (656), Expect = 0.0
Identities = 786/846 (93%), Gaps = 19/846 (2%)
Strand=Plus/Plus
Query 1 TTCATACTCTCACACTCCAAAATA-CAAAAGAAAAAACAtttttattttttATCTTCCCA 59
||| |||||||||||||||||||| ||||| | |||||| ||| ||||| |||||||||
Sbjct 1 TTCCTACTCTCACACTCCAAAATACCAAAA-ACAAAACA--TTT-TTTTTAATCTTCCCA 56
Query 60 CCAA---AAAT-TC--TCTCTCGTTACATTAAATT-TCTTTAGATGCAAGACTCTTCTTC 112
|||| | || ||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 57 CCAATTTTTTTCTCTTTCTCTCGTTACATTAAATTATCTTTAGATGCAAGACTCTTCCTC 116
Query 113 TCACGGATCACAACGTAACCTCCGGTCACCGGTGCCGGAGAGAACCGGAAAGATTTCGAA 172
||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 117 TCACGAATCGCAACGTAACCTCCGGTCACCGGTGCCGGAGAAAACCGGAAAGAGTTCTAA 176
Query 173 GACTAACAATGAGCAAAAAGGTGTTTCTAAGCAACCAAACTTTCGTGGGGTCAGAATGAG 232
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 177 GACTAAAAATGAGCAAAAAGGTGTTTCTAAACAACCAAATTTTCGTGGGGTCAGAATGAG 236
Query 233 ACAATGGGGAAAATGGGTGTCTGAAATTAGAGAACCAAGAAAGAAATCAAGAATCTGGCT 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 237 ACAATGGGGAAAATGGGTGTCTGAAATTAGAGAACCAAGAAAGAAATCAAGAATATGGCT 296
Query 293 CGGCACTTTCTCAACGCCGGAGATGGCGGCGCGTGCACACGACGTGGCGGCTTTAGCCAT 352
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CGGTACTTTCTCTACGCCGGAGATGGCGGCGCGTGCACACGACGTGGCGGCTTTAGCCAT 356
Query 353 CAAGGGCGGCTCTGCTCACCTTAATTTCCCGGAGCTCGCTTACCATTTGCCGAGACCGGC 412
||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 357 CAAAGGTGGCTCTGCCCACCTTAATTTCCCGGAGCTAGCTTACCATTTGCCGAGACCGGC 416
Query 413 AAGCGCCGACCCTAAAGATATTCAAGAAGCAGCCGCAGCAGCAGCTGCCGTGGACTGGAA 472
||||| ||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 417 TAGCGCGGACCCTAAAGACATTCAAGAAGCCGCCGCCGCAGCAGCTGCCGTTGACTGGAA 476
Query 473 AGCACCGGAGTCTCCGTCTAGCACCGTGACGTCATCTCCAGTCGCTGACGACGCTTTTTC 532
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 477 AGCACCGGAGTCTCCGTCTAGCACCGTGACGTCATCTCCAGTCGCCGACGACGCTTTCTC 536
Query 533 CGATCTCCCTGATCTTTTGCTTGACGTGAATGATCACAACAAAAACGATGGATTCTGGGA 592
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CGATCTTCCTGATCTTTTGCTTGACGTGAATGATCACAACAAAAACGATGGATTCTGGGA 596
Query 593 CTCGTTTCCGTACGAAGATCCTTTCTTCTTGGAAAATTATTAGAAGGCAAATTCTTGCCA 652
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 597 CTCGTTTCCGTACGAAGATCCTTTCTTCTTGGAAAATTACTAGAAGGCAAATTCTTGCCG 656
Query 653 GCGAATGAATTTTCTGGTGGTTTTCCCGGTAAATAAGAAGACGATGTCGTTTTGCACCTT 712
||||| | |||||| |||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 657 GCGAACGGATTTTCCGGTGGTTT-CCCGGTAAATAAGAAGACGATGTCGTTTTGTACCTT 715
Query 713 TTTTGTCT-CTGTTGGGAAATTTCTTTTTGT---ACGTGTGAGTAAAAAGTTTCCGAATG 768
|||||||| | | |||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 716 TTTTGTCTAC-GATGGGAAATTTCTTTTTTTTTTACGTGTGAGTAAAA-GTTTCCGAATG 773
Query 769 TGTGATGTGTAAGTAAGTACAGGTTATTTAATTTCttttttttGTATAAATACGTACGTA 828
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 774 TGTGATGTGTAAGTAAGTACAGGTTATTTAATTTCTTTTTTTTGTACAAATACGTACGTC 833
Query 829 ATTACC 834
||||||
Sbjct 834 ATTACC 839
> AT2G35700.1 | Symbols: ATERF38, ERF38 | ERF family protein 38
| chr2:15005205-15005789 FORWARD LENGTH=585
Length=585
Score = 302 bits (163), Expect = 5e-81
Identities = 237/274 (86%), Gaps = 0/274 (0%)
Strand=Plus/Plus
Query 189 AAAGGTGTTTCTAAGCAACCAAACTTTCGTGGGGTCAGAATGAGACAATGGGGAAAATGG 248
|||| |||||| ||||| ||||| ||||| || |||||||||||||||||||||||||||
Sbjct 109 AAAGTTGTTTCGAAGCATCCAAATTTTCGAGGTGTCAGAATGAGACAATGGGGAAAATGG 168
Query 249 GTGTCTGAAATTAGAGAACCAAGAAAGAAATCAAGAATCTGGCTCGGCACTTTCTCAACG 308
||||| ||||| ||||| |||| |||||||||||||||||||||||| |||||||| |||
Sbjct 169 GTGTCCGAAATCAGAGAGCCAAAAAAGAAATCAAGAATCTGGCTCGGTACTTTCTCCACG 228
Query 309 CCGGAGATGGCGGCGCGTGCACACGACGTGGCGGCTTTAGCCATCAAGGGCGGCTCTGCT 368
||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||
Sbjct 229 GCGGAGATGGCGGCGCGTGCTCACGACGTGGCAGCTTTAGCCATCAAAGGCGGTTCTGCA 288
Query 369 CACCTTAATTTCCCGGAGCTCGCTTACCATTTGCCGAGACCGGCAAGCGCCGACCCTAAA 428
|| || || ||||||||||||||||| || | || ||||| || || ||||||||||||
Sbjct 289 CATCTCAACTTCCCGGAGCTCGCTTATCACCTCCCTAGACCAGCTAGTGCCGACCCTAAA 348
Query 429 GATATTCAAGAAGCAGCCGCAGCAGCAGCTGCCG 462
|| || |||| || ||||| ||||| || ||||
Sbjct 349 GACATCCAAGCTGCCGCCGCCGCAGCTGCAGCCG 382
> AT5G11590.1 | Symbols: TINY2 | Integrase-type DNA-binding superfamily
protein | chr5:3727534-3728726 REVERSE LENGTH=1193
Length=1193
Score = 126 bits (68), Expect = 3e-28
Identities = 152/191 (80%), Gaps = 11/191 (6%)
Strand=Plus/Plus
Query 215 TCGTGGGGTCAGAATGA-GACAATGGGGAAAATGGGTGTCTGAAATTAGAGAACCAAGAA 273
||| || || || |||| || | ||||||||||||||||| || ||| | || || || |
Sbjct 380 TCGCGGAGTAAGGATGAGGA-ACTGGGGAAAATGGGTGTCGGAGATTCGTGAGCCGAGGA 438
Query 274 AGAAATCAAGAATCTGGCTCGGCACTTTCTCAACGCCGGAGATGGCGGCGCGTGCACACG 333
|||||||| | || ||||| || |||||| | ||||||||||||||||||||||||||||
Sbjct 439 AGAAATCACGTATTTGGCTGGGAACTTTCCCGACGCCGGAGATGGCGGCGCGTGCACACG 498
Query 334 ACGTGGCGGCTTT-AGCCATCAAGGG--CGGCTCTGCTC-ACCTTAATTTCCCGGAGCTC 389
||||||||||| | ||| || || || |||| | ||| || | || ||||| || |||
Sbjct 499 ACGTGGCGGCTCTGAGC-ATTAAAGGAACGGC-C-GCTATAC-TAAACTTCCCTGAACTC 554
Query 390 GCTTAC-CATT 399
||| || ||||
Sbjct 555 GCTGACTCATT 565
> AT5G25810.1 | Symbols: tny | Integrase-type DNA-binding superfamily
protein | chr5:8986771-8987787 REVERSE LENGTH=1017
Length=1017
Score = 106 bits (57), Expect = 4e-22
Identities = 138/175 (79%), Gaps = 14/175 (8%)
Strand=Plus/Plus
Query 215 TCGTGGG-GTCAGAATGA-GACAATGGGGAAAATGGGTGTCTGAAATTA-GAGAACC-AA 270
||| ||| ||| ||| || || | ||||||||||||||||| || | || | ||||| |
Sbjct 263 TCG-GGGTGTCCGAAAGAGGA-ACTGGGGAAAATGGGTGTCCGAGA-TACGTGAACCTAG 319
Query 271 GAAAGAAATCAAGAATCTGGCTCGGCAC-TTTCTCAACGCCGGAGATGGCGGCGCGTGCA 329
|||| ||||| |||| ||||| || || |||| | | |||||||||||||||||||||
Sbjct 320 GAAA-AAATCCCGAATATGGCTAGGAACGTTTC-CTTCCCCGGAGATGGCGGCGCGTGCA 377
Query 330 CACGACGTGGCGGCT-TTAGCCATCAAGGGCGGCTCTGCTC-ACCTTAATTTCCC 382
|||||||| || ||| ||||| ||||| || | ||| ||| || | ||||||||
Sbjct 378 CACGACGTAGCCGCTCTTAGC-ATCAAAGGAGCCTCCGCTATAC-TCAATTTCCC 430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639424923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5