BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493201
Length=1873
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16745.2 | Symbols: | Exostosin family protein | chr4:94118... 2691 0.0
AT4G32790.1 | Symbols: | Exostosin family protein | chr4:15812... 67.6 4e-10
> AT4G16745.2 | Symbols: | Exostosin family protein | chr4:9411840-9414897
FORWARD LENGTH=2173
Length=2173
Score = 2691 bits (1457), Expect = 0.0
Identities = 1664/1763 (94%), Gaps = 17/1763 (1%)
Strand=Plus/Plus
Query 1 CTCTGGATCGAGAAATCTCCGATCCATTCTTCTCCGTCAGCCAAAATTCCCACTTCACGA 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 28 CTCTGGATCGAGAAATCTCCGATCCATTCTTCTCCGTCTGCCAAAATCCCCACTTCACGA 87
Query 61 ATCGC-AAAGATCAAGGTGTATTGATCTATTGCGAAATTAGGGTTTGTGAATTTGAGTCG 119
||||| |||||||||||| |||||||||||||||||||||||||||||||||| || |||
Sbjct 88 ATCGCAAAAGATCAAGGTTTATTGATCTATTGCGAAATTAGGGTTTGTGAATTCGAATCG 147
Query 120 GAGATTAATAGCATA-A-TTTGTGATGGAGTGCTCATCACGCATAGAAGAATTTTGATTT 177
|||||||||| ||| | |||||||||||||| ||||||||||||||||||| |||||||
Sbjct 148 GAGATTAATA--ATAGATTTTGTGATGGAGTGTTCATCACGCATAGAAGAATCTTGATTT 205
Query 178 CGATCTCGATGAAATTAGGAATTGAGGGGTTTTATTTAT-A---AGATGGTGAATATCAA 233
|||||||||||||||||||||| ||||| |||||||||| | ||||||||||||| ||
Sbjct 206 CGATCTCGATGAAATTAGGAATCGAGGGATTTTATTTATAATTGAGATGGTGAATATTAA 265
Query 234 AAGCCCTTTGCGGCTATTCATAGAGGATTCGATTAAGGAATTAATTAGGGGTTTCAGGAG 293
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 266 AAGCCCTTTACGGCTATTCATAGAGGAGTCGATTAAGGAATTAATTAGGGGTTTCAGGAG 325
Query 294 ACAAAGGATCAAATGGAGAAATGCGTTTCTTCTTGGTTCTATAATGACCACCATTGTTGT 353
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 326 ACAAAGGATCAAATGGAGAAATGCGTTTCTTCTTGGTTCTATAATGACTACCATTGTTGT 385
Query 354 TCTGCTTCATACACCGACGTTTTCAGTCTTCTCTGATGAAGAAGAAACCGAG------TC 407
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 386 TCTGCTTCATACACCAACGTTTTCAGTCTTCTCTGATGAAGAAGAAACCGAGTCTTCTTC 445
Query 408 TTCTTCGCCTATTTATTTGAATGGTTCTCTGCATTTGAATATCCAAATTGTTAGTAGTGA 467
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 446 TTCTTCGCCTATTTACTTGAATGGTTCTCTGCATTTGAATATCCATATTGTTAGTAGTGA 505
Query 468 TGCAAAAGTTGAAAATCTCCATGCTCTTAGAACAAGAACACCTATAGTACAATTGAATGC 527
||||||||||||||| | ||| |||||||||||||||| ||||| || |||||||||||
Sbjct 506 AGCAAAAGTTGAAAATTTTCATACTCTTAGAACAAGAACTCCTATTGTGCAATTGAATGC 565
Query 528 TTCTGAGGCAAGTGGAA-CCGTTATTTTGAGgaaaaggcgaaaaaggaagaaaagaaaga 586
|||||| |||||| ||| | ||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 566 TTCTGAAGCAAGT-GAAGCTGTTCTTTCGAGAAAAAGGCGAAAAAGGAAGAAAAGAAAGA 624
Query 587 agacgaaagacgaaCTGATTCTCCCTGATCCTCCACCAGCACAACCACGTGTTCTATCTT 646
|||| ||||| || ||||||||| |||||||||||||||||| || || |||||||||||
Sbjct 625 AGACAAAAGATGATCTGATTCTCACTGATCCTCCACCAGCACCACGACATGTTCTATCTT 684
Query 647 CCTCAGAGAGACGTGCTCTTTCCTTGCCACCGAAGAAAGCTCTTACTTATGCAAAACTCG 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 685 CCTCAGAGAGACGTGCTCTTTCCTTGCCACCGAAGAAAGCTCTTACTTATGCAAAACTGG 744
Query 707 AGATTCAGCGTGCCCCGGAGATCATAAATGATACGGATCTGTTTGCTCCATTGTTTAGAA 766
|||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| |||
Sbjct 745 AGATTCAGCGTGCCCCGGAGGTCATAAATGATACAGATCTGTTTGCCCCATTGTTTCGAA 804
Query 767 ATCTCTCTGTTTTCAAAAGGAGCTATGAGCTTATGGAACTAATACTGAAGGTCTACATAT 826
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 805 ATCTCTCTGTTTTCAAAAGGAGCTATGAGCTTATGGAACTAATACTAAAGGTCTACATAT 864
Query 827 ATCCCGACGGAGAAAAACCCATCTTCCACCAACCGCATTTGAACGGTATATATGCTTCAG 886
|||| |||||||| ||||||||||||||| |||||||||| || ||||||||||||||||
Sbjct 865 ATCCTGACGGAGACAAACCCATCTTCCACGAACCGCATTTAAATGGTATATATGCTTCAG 924
Query 887 AAGGTTGGTTTATGAAGCTAATGGAGTCAAACACACAGTTTGTCACAAAGAACCCTGAGA 946
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 925 AAGGTTGGTTTATGAAGCTAATGGAGTCAAACAAACAGTTTGTCACAAAGAACCCTGAGA 984
Query 947 AGGCTCACTTGTTCTACATGCCATATAGTGTGAAGCAGCTTCAGACAAGTATCTTTGTCC 1006
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
Sbjct 985 GGGCTCACTTGTTCTACATGCCATATAGTGTGAAACAGCTTCAGAAAAGTATCTTTGTTC 1044
Query 1007 CTGGATCACATAACATTAAACCTTTGTCGATCTTTCTTAGAGACTACGTCAACATGCTCT 1066
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1045 CTGGATCACATAACATCAAACCTTTATCGATCTTTCTTAGAGACTACGTCAACATGCTCT 1104
Query 1067 CCACCAAATACCCTTTCTGGAACCGCACTCACGGATCAGATCATTTCCTTGTCGCTTGCC 1126
||| ||||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1105 CCATCAAATACCCCTTCTGGAACCGCACTCATGGGTCAGATCATTTCCTTGTCGCTTGCC 1164
Query 1127 ATGATTGGGGTCCTTACACAGTGAACGAGCATCCAGAGCTAAGACGAAACACTATTAAAG 1186
| ||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||
Sbjct 1165 ACGATTGGGGTCCTTACACAGTGAACGAGCACCCAGAGCTAAAACGAAACGCTATTAAAG 1224
Query 1187 CTCTCTGCAATGCAGACTTATCAGACGGAATCTTCGTCCCGGGGAAAGACGTTTCTCTCC 1246
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1225 CTCTCTGCAATGCAGACTTATCAGATGGAATCTTCGTCCCGGGGAAAGACGTTTCTCTCC 1284
Query 1247 CGGAAACATCCATAAGAAACGCCGGGAAACCACTCCGCAACATCGGAAACGGAAACAGAG 1306
| |||||||||||||||||||| || | |||||| |||||||| ||||||||||||||||
Sbjct 1285 CTGAAACATCCATAAGAAACGCAGGTAGACCACTACGCAACATAGGAAACGGAAACAGAG 1344
Query 1307 TTTCTCAACGTCCCATCCTCGCTTTCTTCGCTGGAAACCCCCACGGTCGTGTCCGACCAA 1366
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1345 TTTCTCAACGTCCCATCCTCGCTTTCTTCGCTGGAAACCTCCACGGTCGTGTCCGTCCAA 1404
Query 1367 AGCTTCTAAAACACTGGAGAAACAAAGACGATGACATGAAAATCTACGGTCCGCTTCCAC 1426
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1405 AGCTTCTAAAACACTGGAGAAACAAAGACGAGGACATGAAAATCTACGGTCCGCTTCCAC 1464
Query 1427 ACAACGTAGCTAGGAAAATGACTTACGTACAACACATGAAATCAAGCAAATACTGTCTTT 1486
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1465 ACAACGTAGCTAGGAAAATGACTTACGTACAACACATGAAATCAAGCAAGTACTGTCTTT 1524
Query 1487 GTCCAATGGGTTACGAAGTGAACAGTCCACGAATCGTTGAGGCTATATACTACGAGTGTG 1546
||||||||||||||||||||||||||||||| |||||||| ||||||||||| || || |
Sbjct 1525 GTCCAATGGGTTACGAAGTGAACAGTCCACGTATCGTTGAAGCTATATACTATGAATGCG 1584
Query 1547 TCCCCGTAGTGATCGCTGATAACTTCATGTTACCGTTCAGCGATGTGCTGGATTGGTCAG 1606
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1585 TCCCTGTAGTGATCGCTGATAACTTCATGTTACCGTTCAGCGATGTGCTAGATTGGTCAG 1644
Query 1607 CGTTCTCAGTGGTTGTGCCGGAGAAGGAGATTCCACGGCTGAAGGAGATACTATTGGAGA 1666
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 CGTTCTCAGTGGTTGTACCGGAGAAGGAGATTCCACGGCTGAAGGAGATACTATTGGAGA 1704
Query 1667 TTCCTATGAGGAGATATCTGAAGATGCAGAGTAACGTGAAGATGGTTCAGAGACATTTCT 1726
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1705 TTCCTATGAGGAGATATTTGAAGATGCAGAGTAACGTGAAGATGGTTCAGAGACATTTCT 1764
Query 1727 TGTGGAGCCCCAAACCTAGAAAG 1749
|||||||||| ||||||||||||
Sbjct 1765 TGTGGAGCCCTAAACCTAGAAAG 1787
> AT4G32790.1 | Symbols: | Exostosin family protein | chr4:15812095-15814987
FORWARD LENGTH=1925
Length=1925
Score = 67.6 bits (36), Expect = 4e-10
Identities = 84/105 (80%), Gaps = 12/105 (11%)
Strand=Plus/Plus
Query 1688 AGATGCAGAGT-A-ACGTGAAGATGGTTCAG-AGACATTT-CTTGTGG-AGCCCCAAACC 1742
||||||||| | | | || |||||||| ||| || ||||| ||| ||| | | |||||
Sbjct 1725 AGATGCAGA-TGAGA-GTCAAGATGGTGCAGAAG-CATTTCCTT-TGGCA-TTCTAAACC 1779
Query 1743 TAGAAAG-TACGATGTGTTTCATATGATACTTCACTCCATTTGGT 1786
| || || | |||| | ||||||||||||||||||||||||||||
Sbjct 1780 T-GAGAGATTCGATATATTTCATATGATACTTCACTCCATTTGGT 1823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92720406615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5