BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493202
Length=1801
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16740.1 | Symbols: ATTPS03, TPS03 | terpene synthase 03 | c... 1893 0.0
> AT4G16740.1 | Symbols: ATTPS03, TPS03 | terpene synthase 03 |
chr4:9407768-9410877 FORWARD LENGTH=1786
Length=1786
Score = 1893 bits (1025), Expect = 0.0
Identities = 1169/1238 (94%), Gaps = 11/1238 (1%)
Strand=Plus/Plus
Query 1 TAAAATATTATAGCGGAGTCTAAAGAAGAGTTCATCCAATTATTTAACTCTTTAGTGTTA 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 10 TAAAATATCATAGCGGAGTCTAAAGAAGAGTTCATCCAATTATTTAACTCTTTAGTGTAA 69
Query 61 TCATTAGCAAAGCAAAGAAATGCCTAAACGACATGTTCAACCGCGTTTCACTGGCAAGGC 120
|||||||||| |||||||||||||||||||||| | ||||| |||||||||| ||||| |
Sbjct 70 TCATTAGCAACGCAAAGAAATGCCTAAACGACAGGCTCAACGGCGTTTCACTCGCAAGAC 129
Query 121 TGAGTCGAAGACACCATCCCAGCCTCTTGTAGCCCGTCGCTCTGCAAACTATCAACCGTC 180
||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 130 TGACTCGAAAACACCATCCCAGCCTCTGGTATCCCGTCGCTCTGCAAACTATCAACCGTC 189
Query 181 TCTTTGGGAGCACGAGTATCTCCTCTCGCTCGGTAATACAGATGTGAAAGAGGCCGACAA 240
||||||| ||||||| |||||||||||||||||||||||| |||||||||| | |||||
Sbjct 190 TCTTTGGCAGCACGAATATCTCCTCTCGCTCGGTAATACATATGTGAAAGA-G--GACAA 246
Query 241 CATCGAGAGAGTTATGTTATTGAAGCAGGAAGTGAGTAAAATGCTCAATGAAACGGAGGG 300
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 247 CGTCGAGAGAGTTACGTTATTGAAGCAGGAAGTGAGTAAAATGCTCAATGAAACGGAAGG 306
Query 301 TTTACTCGAACAGCTAGAGCTCGTCGACACTTTACAGAGGCTTGGAGTTTCTTACCATTT 360
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 307 TTTACTCGAACAGCTAGAGCTCATCGACACTTTACAAAGGCTTGGAGTTTCTTACCATTT 366
Query 361 TGAACGTGAAATCAAGAAGACTCTAACGAATGTGCATGTAAAAAATGTGAGAGCACACAA 420
||||| |||||||||||||| ||||||||||||||||| ||||||||| ||||||||||
Sbjct 367 TGAACAAGAAATCAAGAAGACACTAACGAATGTGCATGTTAAAAATGTGCGAGCACACAA 426
Query 421 AAAACGGATAGATCG----C--TGGGAAGACTTATACGCGACCGCCCTTGAGTTCCGACT 474
||| ||||||||||| | |||| ||| |||||||||||||||||||||||||||||
Sbjct 427 AAACCGGATAGATCGAAACCGATGGGGAGATTTATACGCGACCGCCCTTGAGTTCCGACT 486
Query 475 CCTACGGCAACATGGTTTCAGTATCGCAGAAGATGTTTTAGACGGAAATATTGGAGATGA 534
|||| ||||||||||||||||||||||| |||||||||| |||||||||||||||| |||
Sbjct 487 CCTAAGGCAACATGGTTTCAGTATCGCACAAGATGTTTTTGACGGAAATATTGGAGTTGA 546
Query 535 TTTGGATGATAAAGACATCAAGGGTATTCTTTCACTATACGAAGCTTCATATCTCTCGAC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TTTGGATGATAAAGACATCAAGGGTATTCTTTCACTATACGAAGCTTCATATCTCTCGAC 606
Query 595 CAGAATCGATACTAAATTGAAAGAGAGCATATGCTATACAACAAAACGACTTAGAAAATT 654
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 607 CAGAATCGATACTAAATTGAAAGAGAGCATATACTATACAACAAAACGACTTAGAAAATT 666
Query 655 TGTGGAGGTTAATAAGACTGAGAACAAATATTACACTCTTCGAAGGATGGTGATCCATGC 714
||||||||| ||||||| ||||| ||||| ||||||||||||||||||||| || |||||
Sbjct 667 TGTGGAGGTAAATAAGAATGAGACCAAATCTTACACTCTTCGAAGGATGGTTATACATGC 726
Query 715 CTTAGAGATGCCGTACCACCGGAGAGTGGGAAGATTAGAAGCAAGGTGGTACATAGACGT 774
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 727 GTTAGAGATGCCGTACCACCGGAGAGTGGGAAGACTAGAAGCAAGATGGTACATAGAAGT 786
Query 775 GTACGGAGAGAGACACGACTTGAACACTATCTTGCTTGAATTCGCGAAACTTGATTTCAA 834
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||
Sbjct 787 GTACGGAGAGAGACACGACATGAACCCTATCTTGCTTGAACTCGCGAAACTTGATTTTAA 846
Query 835 TTTCGTACAAGCTATCCATCAAGACGAGCTCAAATCTCTCTCTAGTTGGTGGAGCAAGAC 894
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 847 TTTCGTACAAGCTATCCATCAAGACGAGCTCAAATCCCTCTCTAGTTGGTGGAGCAAGAC 906
Query 895 GGGATTAACAAAACACCTCGATTTCGTTAGAGATCGAATAACGGAGAGTTATTTCTCGAG 954
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 907 GGGATTAACAAAACACCTCGATTTCGTTAGAGATCGAATAACGGAGGGTTATTTCTCGAG 966
Query 955 TGTTGGAGTAATCTATGAGCCGGAGTTTGCATATCACCGACAAATGCTTACAAAAGTTTT 1014
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 967 TGTTGGAGTAATGTATGAGCCCGAGTTTGCATATCACCGACAAATGCTTACAAAGGTTTT 1026
Query 1015 CATGCTTATAACAACTATCGACGATATATACGATATTTATGGGACA-TTGGAGGAGCTTC 1073
|||||| || |||||||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct 1027 CATGCTCATTACAACTATCGACGATATATACGATATTTATGGGACACTTG-AGGAGCTCC 1085
Query 1074 AACTATTCACAACCATAGTTGAAAAATGGGATGTGAATCGTCTTGAAGAACTTCCCAAGT 1133
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1086 AACTATTCACGACCATAGTTGAAAAATGGGATGTGAATCGTCTTGAAGAACTTCCCAACT 1145
Query 1134 ACATGAAGTTATGTTTTCTCTGCCTCGTCAACGAAATCAATCAGATTGGATATTTTGTTC 1193
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1146 ACATGAAGTTATGTTTTCTCTGCCTCGTCAACGAAATCAATCAGATTGGATATTTTGTAC 1205
Query 1194 TCAGAGATAAAGGGTTTAATGTGATTCCTTACCTCaaa 1231
||||||||||||||||||||||||||||||||||||||
Sbjct 1206 TCAGAGATAAAGGGTTTAATGTGATTCCTTACCTCAAA 1243
Score = 628 bits (340), Expect = 4e-179
Identities = 484/547 (88%), Gaps = 35/547 (6%)
Strand=Plus/Plus
Query 1280 TGGGCAGATATGTGTACAACGTTTTTGAAAGAGGCAATGTGGTACAAAAGTGGTTACAAA 1339
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1250 TGGGCAGATATGTGTACAACGTTTTTGAAAGAGGCAAAGTGGTATAAAAGTGGTTACAAA 1309
Query 1340 CCTAACTTCGAAGAATACATGCATAATGGTTGGATCTCAAGTTCAGTCCCTACAATACTT 1399
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1310 CCTAACTTCGAAGAATACATGCAAAATGGTTGGATCTCAAGCTCAGTCCCTACAATACTT 1369
Query 1400 CTACACTTGTTCTGTCTCTTCTCCGACCAAGCCTTAGACATTCTTGTCTCCTACAATCAC 1459
|||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||
Sbjct 1370 CTACACTTGTTCTGTCTCTTATCCGACCAAACCTTAGACATTCTTGGCTCCTACAATCAC 1429
Query 1460 TCTGTAGTTCGAAGCTCCGCCACCATCCTCCGTCTCGCTAACGATCTCGCCACTTCTTCG 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 TCTGTAGTTCGAAGCTCCGCCACCATCCTCCGTCTCGCTAACGATCTCGCCACTTCTTCG 1489
Query 1520 GTCAGTCATGGAGGAATTAGCGAGAGGCGACACTATGAAATCCGTACAATG-CAGA-G-- 1575
| || | | | ||||||||||||||||||||||||||||||||||| || | |
Sbjct 1490 G--AG----G-A--A-TTAGCGAGAGGCGACACTATGAAATCCGTACAATGTCACATGCA 1539
Query 1576 TCA--C-GC-GCGT---AT--AGA--CA------T---T-CAAGGAACGATTGGTGTCGC 1614
| | | | || | | ||| || | | ||||||| || ||||| ||
Sbjct 1540 TGAAACTGGAGCTTCGGAGGCAGAGTCACGCGCGTACATTCAAGGAATTATCGGTGTGGC 1599
Query 1615 TTGGGATGACTTAAACTTGGAGAAATGGAGTTGTAAGTTGCATCAAAGTTTCGTAGAAGC 1674
|||||||||||||||| |||||||| |||||||| | | |||||| ||||| |||||||
Sbjct 1600 TTGGGATGACTTAAACATGGAGAAAAAGAGTTGTAGGCTACATCAAGGTTTCCTAGAAGC 1659
Query 1675 TGCGGTTAATCTTGGACGTGTGGCTCAATGTGTTTATCAGTACGGTGATGGCCATGGCTG 1734
||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1660 TGCGGCTAATCTTGGACGTGTGGCTCAGTGCGTTTATCAGTACGGTGATGGCCATGGCTG 1719
Query 1735 TCCTGACAAGGCTAAGACCGTCAATCATGTCCGGTCCTTGCTCGTCCACCCTGTTCCACT 1794
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1720 TCCTGACAAGGCTAAGACCGTCAATCATGTCCGGTCCTTGCTCGTCCACCCTCTTCCACT 1779
Query 1795 CAATTAA 1801
|||||||
Sbjct 1780 CAATTAA 1786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89105967375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5