BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493205
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16720.1 | Symbols: | Ribosomal protein L23/L15e family pro... 1389 0.0
AT4G17390.1 | Symbols: | Ribosomal protein L23/L15e family pro... 641 0.0
> AT4G16720.1 | Symbols: | Ribosomal protein L23/L15e family protein
| chr4:9399960-9401382 REVERSE LENGTH=878
Length=878
Score = 1389 bits (752), Expect = 0.0
Identities = 798/820 (97%), Gaps = 3/820 (0%)
Strand=Plus/Plus
Query 1 CACTTTAAATCAGGAACAAACCCTTCACTGCGCCAGTCTTGTGCGGCTCTGCGAATCTTC 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 4 CACTTTAAATCAGGAACAAACCCTTCACTGCGCCAGTGTTGTGCGGCTCTGCGAATCTTC 63
Query 61 GAAAATGGGTGCGTACAAGTATGTATCGGAGCTATGGAGGAAGAAACAGTCCGATGTGAT 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 64 GAAAATGGGTGCGTACAAGTATGTATCTGAGCTATGGAGGAAGAAACAGTCCGATGTGAT 123
Query 121 GAGATTCCTCCAGAGGGTGAGGTGTTGGGAGTACAGACAGCAACCTTCGATTGTTCGTCT 180
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 124 GAGATTCCTCCAGAGGGTTAGGTGCTGGGAGTACAGACAGCAACCTTCGATTGTTCGTCT 183
Query 181 TGTCAGGCCTACTCGTCCTGATAAGGCTCGTCGTTTGGGTTACAAGGCCAAGCAGGGCTT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CGTCAGGCCTACTCGTCCTGATAAGGCTCGTCGTTTGGGTTACAAGGCCAAGCAGGGCTT 243
Query 241 TGTTGTGTACCGTGTCCGTGTGAGACGTGGTGGTCGCAAGAGGCCAGTGCCTAAGGGTAT 300
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 244 TGTTGTGTACCGTGTACGTGTGAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTAT 303
Query 301 CGTGTATGGTAAGCCCACAAACCAGGGAGTGACACAACTCAAGTTCCAGCGTAGCAAGCG 360
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TGTGTATGGTAAGCCAACAAACCAGGGAGTGACACAACTCAAGTTCCAGCGTAGCAAGCG 363
Query 361 GTCTGTTGCTGAGGAGCGTGCTGGCAGGAAATTGGGTGGTCTCAGAGTTGTCAACTCTTA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TTCTGTTGCTGAGGAGCGTGCTGGCAGGAAATTGGGTGGTCTCAGAGTTGTCAACTCTTA 423
Query 421 CTGGCTCAATGAGGATTCGACGTACAAGTATTACGAGATCATCTTGGTTGACCCAGCACA 480
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 424 CTGGCTCAATGAGGATTCGACCTACAAGTACTACGAGATCATCTTGGTTGACCCAGCACA 483
Query 481 CAATGCTGTGCGTAATGACCCGAGAATCAACTGGATCTGCAACCCAGTTCACAAGCACCG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 CAATGCTGTGCGTAATGACCCGAGAATCAACTGGATCTGCAACCCAGTTCACAAGCACCG 543
Query 541 TGAGCTCAGAGGACTTACCTCAGAGGGAAAGAAGAACAGAGGTCTTCGTGGAAAGGGTCA 600
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 544 TGAGCTCAGAGGACTTACCTCAGAGGGAAAGAAGAACAGAGGTCTCCGCGGAAAGGGTCA 603
Query 601 CAACAACCACAAGAACCGTCCATCTCGCAGGGCTACATGGAAGAAGAACAACTCCCTC-G 659
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 604 CAACAACCACAAGAACCGTCCATCTCGCAGGGCTACATGGAAGAAAAACAACTCTCTCAG 663
Query 660 TCCTTCGCCGTTACCGTTGATTGCCTTTTGCTTTTATTATCACTGTTATCATCTTCTAGG 719
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 664 -CCTTCGTCGTTACCGTTGATTGCCTTTTGCTTTTATTATTACTGTTATCATCTTCTAGG 722
Query 720 TTCCATGTTGTTGCACTTTTATCTCTCTCAGGATGACTTGTTTTTTGCAAATTTTGGAGA 779
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 723 TTCCATGTTGTTGCACTTTTATCTCTCTCAGGATGACTTGTTTTT-GCAAATTTTGGAGA 781
Query 780 CTATACAATTATGCTTTGAACCTAAGTTTTATATTTGCTT 819
||||||||||||||||||||||||| ||||||||||||||
Sbjct 782 CTATACAATTATGCTTTGAACCTAAATTTTATATTTGCTT 821
> AT4G17390.1 | Symbols: | Ribosomal protein L23/L15e family protein
| chr4:9714092-9715612 REVERSE LENGTH=997
Length=997
Score = 641 bits (347), Expect = 0.0
Identities = 534/624 (86%), Gaps = 14/624 (2%)
Strand=Plus/Plus
Query 64 AATGGGTGCGTACAAGTATGTATCGGAGCTATGGAGGAAGAAACAGTCCGATGTGATGAG 123
||||||||||||||| || || |||||||||||||||||||| ||||| |||||||||||
Sbjct 67 AATGGGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAG 126
Query 124 ATTCCTCCAGAGGGTGAGGTGTTGGGAGTA-CAGACAGCAACCTTCGATTGTTCGTCTTG 182
|| || |||||||| |||||||||||||| | | ||||| ||||| |||||||||||||
Sbjct 127 GTTTCTTCAGAGGGTTAGGTGTTGGGAGTATC-GCCAGCAGCCTTCCATTGTTCGTCTTG 185
Query 183 -TCAGGCCTACTCGTCCTGATAAGGCTCGTCGTTTGGGTTACAAGGCCAAGCAGGGCTTT 241
|| | || |||||||| || |||||||||||| | || ||||||||||||||||| |||
Sbjct 186 TTC-GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGGGGTTT 244
Query 242 GTTGTGTACCGTGTCCGTGTGAGACGTGGTGGTCGCAAGAGGCCAGTGCCTAAGGGTATC 301
||||| |||||||| || || ||||||||||| |||||||||||||||||||||||||||
Sbjct 245 GTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTATC 304
Query 302 GTGTATGGTAAGCCCACAAACCAGGGAGTGACACAACTCAAGTTCCAGCGTAGCAAGCGG 361
||||| ||||| ||||| ||||||||||||||||| ||||| ||||||||||| ||| |
Sbjct 305 GTGTACGGTAAACCCACCAACCAGGGAGTGACACAGCTCAAATTCCAGCGTAGTAAGAGA 364
Query 362 TCTGTTGCTGAGGAGCGTGCTGG-CAGGAAATTGGGTGGTCTCAGAGTTGTCAACTCTTA 420
|||||||||||||| |||||||| | | ||| |||| || || || ||||| ||||| ||
Sbjct 365 TCTGTTGCTGAGGAACGTGCTGGTC-GCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTA 423
Query 421 CTGGCTCAATGAGGATTCGACGTACAAGTATTACGAGATCAT-CTTGGTTGACCCAGCAC 479
||||||||||||||| || || |||||||| |||||||| || ||| || ||||| ||||
Sbjct 424 CTGGCTCAATGAGGACTCTACCTACAAGTACTACGAGATTATCCTT-GTAGACCCTGCAC 482
Query 480 ACAATGCTGTGCGTAATGACCCGAGAATCAACTGGATCTGCAACCCAGTTCACAAGCACC 539
||||||| || || ||||| || || |||||||||||||||||||| || |||||||||
Sbjct 483 ACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAACCCTGTGCACAAGCACA 542
Query 540 GTGAGCTCAGAGGACTTACCTCAGAGGGAAAGAAGAA-CAGAGGTCTTCGTGGAAAGGGT 598
| || |||||||| || ||||| || ||||||||||| | | ||||||||||||||||||
Sbjct 543 GAGAACTCAGAGGTCTCACCTCCGAAGGAAAGAAGAATC-GTGGTCTTCGTGGAAAGGGT 601
Query 599 CACAACAACCACAAGAACCGTCCATCTCGCAGGGCTACATGGAAGAAGAACAAC--TCCC 656
|||||||||||||||||| | || || |||||||| || ||||||||||||||| | |
Sbjct 602 CACAACAACCACAAGAACAGACCTTCCCGCAGGGCAACCTGGAAGAAGAACAACAGTATC 661
Query 657 TCGTCCTTCGCCGTTACCGTTGAT 680
|| || | || |||||||| ||||
Sbjct 662 TC-TC-TCCGTCGTTACCGGTGAT 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40991063952
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5