BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493210
Length=3060
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16660.1 | Symbols: | heat shock protein 70 (Hsp 70) family... 3650 0.0
> AT4G16660.1 | Symbols: | heat shock protein 70 (Hsp 70) family
protein | chr4:9376737-9381507 FORWARD LENGTH=3023
Length=3023
Score = 3650 bits (1976), Expect = 0.0
Identities = 2152/2237 (96%), Gaps = 11/2237 (0%)
Strand=Plus/Plus
Query 1 AGTTTTCTCCAGAACCTGACGG-AAAAAACTTTGAATCTGCAAATCGATTTCCCCCGGAG 59
|||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||
Sbjct 16 AGTTTTCTCCAGAACCTGACGGAAAAAAAC-TTGAATCTGCAAATCGACTTCCCCCGGAG 74
Query 60 AATGCGATCGGAGATCGGAAACTGAGGAATTTCTGCTCTCTACTCGCGGTGTTTAGTTAA 119
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 75 AATGCGATCGGAGATCGGAAACTGAGGAATTGCTGCTCTCTACTCGCGGTGTTTAGTTTA 134
Query 120 CGATTGGAATATGGGGAAGATGTTAACCTGGTTAGTGGTGTTATTGTCATTGATATCTTT 179
||||||||||||||||||||| || | ||||||||||||||||||||||||||| || ||
Sbjct 135 CGATTGGAATATGGGGAAGATATTTAGCTGGTTAGTGGTGTTATTGTCATTGATCTCATT 194
Query 180 AGTCCCTGTTCCATCGGAATCGGCTGTTTCGAGTGTAGATCTAGGTTCAGAATGGGTTAA 239
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 195 AGTCCCTGTTCCATCGGAATCGGCTGTTTTGAGTGTAGATCTAGGTTCAGAATGGGTTAA 254
Query 240 AGTTGCCGTAGTTAATCTGAAACGGGGACAGAGTCCAATCTCTGTAGCTATTAATGAGAT 299
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 255 AGTTGCCGTAGTTAATCTGAAACGAGGACAGAGTCCAATCTCTGTAGCCATTAATGAGAT 314
Query 300 GTCCAAGAGGAAATCCCCAGCTTTAGTAGCATTCCAATCTGGAGACCGGTTACTGGGTGA 359
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 315 GTCCAAGAGGAAATCCCCAGCTTTAGTAGCATTTCAATCTGGAGACCGGTTACTAGGCGA 374
Query 360 GGAAGCTGCGGGGATAACGGCTCGTTATCCGAATAAAGTTTATTCACAACTGAGGGACAT 419
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 375 GGAGGCTGCGGGAATAACGGCTCGTTATCCGAATAAAGTTTATTCACAACTGAGGGATAT 434
Query 420 GGTGGGAAAACCTTTCAAACATGTGAAGGATTTCATCGATTCTGTCTACTTGCCGTTCGA 479
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||
Sbjct 435 GGTGGGAAAACCTTTCAAACATGTTAAGGATTTCATTGATTCTGTCTACTTGCCTTTTGA 494
Query 480 TATTGTGGAAGATTCTAGAGGTGCAGTTGGTATTAAGATCGATGACGGTTCGACTGTTTA 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TATTGTAGAAGATTCTAGAGGTGCAGTTGGTATTAAGATCGATGACGGTTCGACTGTTTA 554
Query 540 CTCAGTGGAGGAGTTGTTAGCTATGATCTTGGGTTATGCCTCAAATCTAGCTGAGTTCCA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CTCAGTGGAGGAGTTGTTAGCTATGATCTTGGGTTATGCCTCAAATCTAGCTGAGTTCCA 614
Query 600 TGCCAAAATCCCAGTGAAGGATATGGTAGTTTCAGTTCCACCTTACTTTGGACAGGCTGA 659
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 615 TGCTAAAATCCCAGTGAAGGATATGGTTGTTTCAGTTCCACCTTACTTTGGACAGGCTGA 674
Query 660 GAGACGGGGTTTGATCCAGGCTTCTCAGTTGGCTGGGGTTAATGTTCTCTCCCTGGTTAA 719
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 675 GAGACGGGGTTTGATCCAGGCTTCTCAGTTGGCTGGGGTTAATGTCCTCTCCCTGGTTAA 734
Query 720 TGAGCATTCCGGTGCCGCTTTGCAGTATGGGATTGATAAGGATTTCT-CTAATGGGTCGA 778
||||||||||||||| |||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 735 TGAGCATTCCGGTGCTGCTTTGCAATATGGGATTGATAAGGATTT-TGCTAATGGGTCGA 793
Query 779 GACATGTCATATTTTATGACATGGGTTCAAGTAGTACTTACGCAGCCCTTGTCTATTACT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 GACATGTCATATTTTATGACATGGGTTCAAGTAGTACTTACGCAGCCCTTGTCTATTACT 853
Query 839 CAGCTTACAGTGAGAAGGAATATGGCAAGACTGTTTCTGTCAACCAATTTCAGGTCAAGG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 CAGCTTACAGTGAGAAGGAATATGGCAAGACTGTTTCTGTCAACCAATTTCAGGTCAAGG 913
Query 899 ATGTTAGATGGGACTCGGAACTTGGAGGACAGAGTATGGAGATGCGCTTGGTAGAGCACT 958
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 914 ATGTTAGATGGGACTTGGGACTTGGAGGACAGAGTATGGAGATGCGCTTGGTAGAGCACT 973
Query 959 TTGCAGATGAGTTTAATAAACAGCTCGGTAATGGAGTTGATGTGAGGAAGTTCCCCAAAG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 TTGCAGATGAGTTTAATAAACAGCTCGGTAATGGAGTTGATGTGAGGAAGTTCCCCAAAG 1033
Query 1019 CAATGGCTAAATTGAAAAAACAAGTCAAACGTACAAAGGAAATTTTGAGTGCAAACACTG 1078
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1034 CAATGGCTAAATTGAAAAAACAAGTCAAGCGTACAAAGGAAATTTTGAGTGCAAACACTG 1093
Query 1079 CAGCTCCAATTTCTGTTGAATCTCTTCATGATGATCGTGACTTCAGGAGTACAATTTCCC 1138
| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1094 CGGCTCCAATATCTGTGGAATCTCTTCATGATGATCGTGACTTCAGGAGCACAATTACCC 1153
Query 1139 GTGAGAAGTTTGAGGAACTTTGTAAAGATCTGTGGGAGAGATCTCTTACACCTTTAAAAG 1198
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 GTGAGAAGTTTGAGGAACTGTGTAAAGATCTGTGGGAGAGATCTCTTACACCTTTAAAAG 1213
Query 1199 ATGTGCTCAAGAATTCAGGTTTGAAGATTGATGATATATCTGCAGTGGAGCTAATAGGAG 1258
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1214 ATGTGCTCAAGCATTCAGGTTTGAAGATTGATGATATATCTGCAGTGGAACTAATAGGAG 1273
Query 1259 GAGCTACTAGAGTTCCCAAACTACAGAGTACAATCCAGGAATTTATTGGGAAACAACAGT 1318
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1274 GAGCTACTAGAGTTCCCAAACTACAGAGCACAATCCAGGAATTTATTGGGAAACAACAGT 1333
Query 1319 TAGACAAACATCTGGATGCTGATGAGGCTATTGTTCTCGGCTCTGCACTACATGCTGCTA 1378
||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1334 TAGACAAACATCTAGACGCTGATGAGGCTATTGTCCTCGGCTCAGCACTACATGCTGCTA 1393
Query 1379 ACTTGAGCGATGGAATTAAATTGAAACGTAGGCTAGGAATAGTTGATGGTTCCCCCTATG 1438
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1394 ACTTGAGCGATGGAATTAAATTGAAACGTAGGCTAGGTATAGTTGATGGTTCCCCCTATG 1453
Query 1439 GTTTTCTAGTTGAGTTGGAAGGCCCTAATGTTAAGAAAGATGAGAGCACAAAGCAGCAAA 1498
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 GTTTTCTGGTTGAGTTGGAAGGCCCTAATGTTAAGAAAGATGAGAGCACAAAGCAGCAAC 1513
Query 1499 TCGTACCACGTATGAAAAAGCTACCCAGCAAGACT-TTCAGATCATTTGTCCTTGACAAA 1557
|||||||||| |||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 1514 TCGTACCACGGATGAAAAAGCTACCCAGCAAGA-TGTTCAGATCCTTTGTCCTTGACAAA 1572
Query 1558 GATTTTGACGTGTCACTTGCTTATGAGTCCGATGGTATTCTACCCCCAGGAACCACCTCC 1617
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 1573 GATTTTGACGTGTCACTTGCTTATGAGTCTGAGGGTATTCTACCACCAGGAACCACCTCC 1632
Query 1618 CCTGTGTTTGCACAGTATTCTGTCTCTGGTTTGACGGATGCATCTGAGAAATATTCTTCT 1677
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1633 CCTGTGTTTGCACAGTATTCTGTCTCTGGTTTGGCGGATGCATCTGAGAAATATTCTTCT 1692
Query 1678 CGGAATCTATCAGCACCTATCAAGGCAAATTTGCATTTCTCTCTAAGTAGAAGCGGGATT 1737
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1693 CGGAATCTATCAGCACCTATCAAGGCAAATCTGCATTTCTCTCTAAGTAGAAGTGGGATT 1752
Query 1738 CTCAGTCTAGATCGAGGAGATGCTGTGATTGAAATCACAGAATGGGTAGAAGTTCCTAAG 1797
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1753 CTCAGTCTAGATCGAGGAGATGCTGTAATTGAAATCACAGAATGGGTAGACGTTCCTAAG 1812
Query 1798 AAGAACGTGACTATTGATAGTAACACAACCACAGCAACGGGCAATGCCACTGACGAAAAT 1857
||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||
Sbjct 1813 AAGAACGTGACTATTGATAGTAACACAACTACATCAACAGGCAATGCCACTGACGAGAAT 1872
Query 1858 TCACAAGAAAATAAAGAGGACCTACAAACCGATGCTGAAAACAGCACTGCTTCAAATACA 1917
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1873 TCACAAGAAAATAAAGAAGACCTGCAAACCGATGCTGAAAACAGCACTGCTTCAAATACA 1932
Query 1918 ACAGCAGAAGAACCAGCTGTTG-TTGACCTGGGTACAGaaaaaaaGCTGAAAAAGCGGAC 1976
||||||||||| |||||||||| || | |||| ||||||||||||||||| ||||||||
Sbjct 1933 ACAGCAGAAGAGCCAGCTGTTGCTTCTC-TGGGCACAGAAAAAAAGCTGAAGAAGCGGAC 1991
Query 1977 ATTCAGAATACCTCTGAAGGTGGTAGTTGAGAAAACTGTTGGACCTGGAGCACCCTTTAC 2036
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
Sbjct 1992 ATTCAGAATACCTCTGAAGGT---AGTTGAGAAAACTGTTGGACCTGGAGCACCATTTTC 2048
Query 2037 TAAAGAGTCTCTTGCTGAAGCTAAGATAAAATTAGAAGCTTTGGACAAGAAAGATAGGGA 2096
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2049 GAAAGAGTCTCTTGCTGAAGCTAAGATAAAATTAGAAGCCTTGGACAAGAAAGATAGGGA 2108
Query 2097 AAGAAGAAGAACGGCTGAGTTAAAAAACAACCTTGAATCTTATATATATGCTACTAAAGA 2156
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2109 AAGAAGAAGAACGGCTGAGTTAAAAAACAACCTTGAATCTTATATATATGCTACCAAAGA 2168
Query 2157 GAAGCTGGAAACACCCGAGTTTGAAAAGGTATCCACCCAAGAAGAGCGCAAGGCGTTTGT 2216
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2169 GAAGCTGGAAACACCCGAGTTTGAAAAGATATCCACCCAAGAAGAGCGCAAGGCGTTTGT 2228
Query 2217 TGAGAAGCTTGATGAGG 2233
||| |||||||||||||
Sbjct 2229 TGAAAAGCTTGATGAGG 2245
Score = 1105 bits (598), Expect = 0.0
Identities = 729/788 (93%), Gaps = 25/788 (3%)
Strand=Plus/Plus
Query 2280 GGTACAAGATTGGCTCTACATGGACGGAGAAGATGCTAATGCCACAGAGTTTGAGGAGCG 2339
||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 2244 GGTGCAAGATTGGCTTTACATGGATGGAGAAGATGCTAATGCCACAGAGTTTGAGAAGCG 2303
Query 2340 GCTTGACTCACTTAAAGCCATTGGCAGTCCTATATCTTTCCGATCAGAGGAGCTTACAGC 2399
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 2304 GCTTGACTCACTTAAAGCCATCGGCAGTCCCATATCTTTCCGATCAGAGGAGCTTACAGC 2363
Query 2400 ACGGCCAGTAGCAATTGAATACGCTAGGAAATACCTAACTGAACTGAAAGAGATCATAAA 2459
||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 2364 ACGACCAGTAGCAATTGAATATGCTAGGAAATACCTAACTGAACTCAAAGAGATCATAAA 2423
Query 2460 AGAGTGGGAGACGAACAAAACTTGGCTTCCAAAAGAAAAAATCGACGAGGTCTCAAAGGA 2519
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2424 AGAATGGGAGACGAACAAAACTTGGCTTCCAAAAGAAAAAATCGACGAGGTCTCAAAGGA 2483
Query 2520 AGCAGAGAAAGTAAAAAGCTGGTTAGATAAAAATGTGGCTGAGCAAGAAAAGACTTCTCT 2579
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2484 AGCAGAGAAAGTAAAAAGCTGGTTAGATAAGAATGTGGCTGAGCAAGAAAAGACTTCTCT 2543
Query 2580 GTCGAGCAAACCCGTGTTCACGTCCACTGAAGTGTATGCGAAAGTATTTACTCTGCAAGA 2639
|| ||||||||| ||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 2544 GTGGAGCAAACCGGTGTTCACGTCCACTGAAGTGTACGCTAAAGTATTTACTCTACAAGA 2603
Query 2640 CAAGGTCACAAAAGTGAATAAGATCCCAAAGCCAAAGCCAAAGATAGAGAAAGCAACCAA 2699
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2604 CAAGGTCACAAAGGTGAATAAGATCCCAAAGCCAAAGCCAAAGATAGAGAAAGTAACCAA 2663
Query 2700 AACGGAGAACACAACGAAGGAGGAGGAACAATCAAAATCCTCTGATGAAGCTGCCAAAGA 2759
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2664 GACGGAGAACACAACAAAGGAGGAGGAACAATCAAAATCCTCTGATGAAGCTGCCAAAGA 2723
Query 2760 AGAAGAAAGTCACGACGAGCTTTGATTAAC-ATATATAATAAATAGAGTTTTCGTTAAAG 2818
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2724 AGAAGAAAGTCACGACGAGCTTTGATTAAGGATATATAATAAATAGAGTTTTCGTTAA-- 2781
Query 2819 TTAATTTTTGTGTTTTTAAGAGGCAAA-TAGGATTAAAAGTAGGCAGCTGAGATGAGCAA 2877
|| ||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 2782 TT--TTT--GTGTTTTTAAGAGGGAAAATAGGATTAAAAGTAGGCAGCTGAGATGAGCAA 2837
Query 2878 AAGGATTTTATTCCTTTCTCCTCAACTTCTTCACATCAC-ATTAGAAACGGAATATTCTG 2936
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2838 AAGGATTTTATTCCTTTCTCCTCAACTTCTTCACATCACCATTAGAAACGGAATATTCTG 2897
Query 2937 TGtttttttttttgtttttCATTATATCAAGTTTTGGTCTCTTTTTCTTTCTTCCTATAA 2996
||||||| ||||||||||||||||||||||||||||| || | ||| |||||
Sbjct 2898 TGTTTTT------GTTTTTCATTATATCAAGTTTTGGTCTCT----CTAT-TTC-TATAA 2945
Query 2997 TTGAATCTTCAATATA----GTAGAATTTTATAGTTGGCATTGGTTTATTTATGTTGAGA 3052
||||||||||||||| |||||| |||||| ||| |||| |||||||| |||
Sbjct 2946 CTGAATCTTCAATATATTTAGTAGAAGTTTATAACCAACATCAGTTTCTTTATGTTAAGA 3005
Query 3053 CACTTGAT 3060
||||||||
Sbjct 3006 CACTTGAT 3013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 152156338119
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5