BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493211
Length=2257
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16650.1 | Symbols: | O-fucosyltransferase family protein |... 3832 0.0
> AT4G16650.1 | Symbols: | O-fucosyltransferase family protein
| chr4:9372477-9376409 FORWARD LENGTH=2300
Length=2300
Score = 3832 bits (2075), Expect = 0.0
Identities = 2202/2263 (97%), Gaps = 9/2263 (0%)
Strand=Plus/Plus
Query 1 TCTTCACCATTTCGAAAAATCTCAAAACTTTACAGAGAGAAAGAGAGATCCTTTACATAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 TCTTCACCATTTCGAAAAATCTCAAAACTTTACAGAGAGAAAGAGAGATCCTTTACATAT 65
Query 61 ACTTCACTATCTTCCTAAAAACCCTAATCCTCCGATCTGTTTAACCTCCGATCAAGAAAG 120
|||||||| ||||| | |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 66 ACTTCACTGTCTTCTTGAAAACCCTAATCCTCCGATCTGTTTAACCTCCGATCAAGAGAG 125
Query 121 ATTTCTTCAG--TAT-TGTATCAGATTCCTTTGGATTCCCCGATTCTTCGTCGTATCGAA 177
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 ATTTCTTCAGCTTGTGTGTATCAGATTCCTTTGGATTCCCCGATTCTTCGTCGTATCGAA 185
Query 178 TCGGGGGATGGCATTTCCGTGAAATCAGTGATGAAATTGGTGGTGAGAAGAAGTTATTTC 237
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 186 TCGGGGGATGGCATTTCCGTGAAATCAGTGATGAAATTGGAGGTGAGAAGAAGTTATTTC 245
Query 238 TATCTATGGGCGTAGTAGCTGAGGTTTGGAGGTCGAGCGTGAGGCTATTAACGAACTCGC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 TATCTATGGGCGTAGTAGCTGAGGTTTGGAGGTCGAGCGTGAGGCTATTAACGAACTCGC 305
Query 298 CTCAGCCTAACGGTGGCTCTCACAAGAGTGCGTTATGGAAGTGGCGATCTTTCTCTGGTC 357
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 306 CTCAGCTTAACGGTGGCTCTCACAAGAGTGCGTTATGGAAGTGGCGATTTTTCTCTGCTC 365
Query 358 AGCCCAAAAGAACCGTAATGTGGACATGGGTTTGTGGTTTCATGCTTTTCTCTTTAGGAG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 AGCCCAAAAGAACCGTAATGTGGACATGGGTTTGTGGTTTCATGCTTTTCTCTTTAGGAG 425
Query 418 TTATCTCTCTCTTCACCGGTCATGTTGTCTCGCACCTTGAGTGGTATTCTCAGCAATTAA 477
| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 426 TCATCTCACTTTTCACTGGTCACGTTGTCTCGCACCTTGAGTGGTATTCTCAGCAATTAA 485
Query 478 GCAAACGAAGCTTACTGGATATGAGCCGTCGAGAACCAATTGATGTATGGAAGTCAAAAT 537
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 GCAAACGGAGCTTACTGGATATGAGCCGTCGAGAACCAATTGATGTATGGAAGTCAAAAT 545
Query 538 ATTCAAAGTTCTTCTATGGATGCAGTGAGAGAGGAAGGAACTTCCCTCCTGCTGTCCAGG 597
|||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 546 ATTCGAAGTTTTTCTATGGATGCAGTGAGAGAGGAAGGAACTTCCTTCCTGCTGTCCAGG 605
Query 598 AGCACTCGTCTAATGGATATTTGCTTATTGCTGCTAGTGGAGGCCTTAACCAACAAAGAA 657
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 606 AGCAGTCATCTAATGGATATTTGCTTATTGCAGCTAGTGGAGGCCTTAACCAACAAAGAA 665
Query 658 CAGGAATAACAGATGCAGTGGTTGTTGCACGGATTCTTAATGCTACTTTAGTTGTACCCG 717
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 CAGGAATAACTGATGCAGTGGTTGTTGCACGGATTCTTAATGCTACTTTAGTTGTACCCG 725
Query 718 AGTTGGATCACCATTCTTACTGGAAAGATGACAGTGACTTCAGTGACATTTTTGATGTTA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 AGTTGGATCACCATTCTTACTGGAAAGATGACAGTGACTTCAGTGACATTTTTGATGTTA 785
Query 778 ACTGGTTCATATCTTCTCTCGCCAAAGATGTGACTATAGTGAAGAGAGTTCCTGACAGAG 837
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 786 ACTGGTTCATATCTTCTCTCGCCAAAGATGTGACTATAGTAAAGAGAGTTCCCGACAGAG 845
Query 838 TCATGCGTGCGATGGAGAAACCTCCTTATACCACACGTGTGCCTCGAAAGTCTACTCTTG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TCATGCGTGCGATGGAGAAACCTCCTTATACCACACGTGTGCCTCGAAAGTCTACTCTTG 905
Query 898 AGTATTATCTTGACCAAGTATTGCCAATTCTCTCGAGGAGACATGTTTTACAATTGACAA 957
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 906 AGTATTATCTTGACCAAGTATTGCCAATTCTCACGAGGAGACATGTTTTACAATTGACAA 965
Query 958 AGTTTGACTACAGACTAGCAAATGATCTAGACGAAGACATGCAAAAGTTGCGGTGCAGGG 1017
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 966 AGTTTGACTACAGACTAGCAAATGATCTAGATGAAGACATGCAAAAGTTGCGCTGCAGGG 1025
Query 1018 TCAACTATCATGCTTTAAGATTCACAAAGCGGATACAATCAGTTGGGATGAAAGTGGTCA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 TCAACTATCATGCTTTAAGATTCACAAAGCGGATACAATCAGTTGGGATGAAAGTGGTCA 1085
Query 1078 AGAGGATGAGAAAGATGGCCAAACGTTTTATTGCTGTCCACTTGAGATTTGAGCCTGACA 1137
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1086 AGAGGATGAGAAAGATGGCCAAACGTTTTATTGCTGTCCATTTGAGATTTGAGCCTGACA 1145
Query 1138 TGCTAGCCTTTTCTGGTTGTGACTTTGGTGGGGGTGAAAAAGAGAGAGCTGAGCTAGCAG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TGCTAGCCTTTTCTGGTTGTGACTTTGGTGGGGGTGAAAAAGAGAGAGCTGAGCTAGCAG 1205
Query 1198 AAATAAGAAAACGATGGGACACATTGCCTGATCTGGACCCTCTGGAAGAAAGAAAGCGTG 1257
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1206 AAATAAGAAAACGATGGGACACATTGCCTGATCTGGACCCTCTTGAAGAAAGAAAGCGTG 1265
Query 1258 GGAAATGCCCTCTTACACCTCATGAAGTGGGCTTAATGCTGCGCGCTCTTGGTTTTACAA 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 GGAAATGCCCTCTTACACCTCATGAAGTGGGCTTAATGCTGCGCGCTCTTGGTTTTACAA 1325
Query 1318 ACGACACATATATCTATGTTGCATCTGGAGAAATATATGGTGGTGAAAAGACATTGAGAC 1377
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1326 ACGACACATATATCTATGTCGCATCTGGAGAAATATATGGTGGTGAAAAGACACTGAAAC 1385
Query 1378 CATTGAGAGAGCTGTTTCCAAACTTTTACACCAAGGAAATGCTTGCCAACGATGAGCTCA 1437
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 CACTGAGAGAGCTGTTTCCAAACTTTTACACCAAGGAAATGCTTGCCAACGATGAGCTCA 1445
Query 1438 AGCCTCTGCTTCCCTTTTCTTCACGCCTTGCTGCCATTGACTACATTGTTAGTGATGAAA 1497
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1446 AGCCTCTGCTTCCCTATTCTTCACGCCTTGCTGCCATTGACTACATTGTTAGTGACGAAA 1505
Query 1498 GCGACGTGTTTATCACTAATAATAATGGAAATATGGCGAAGATTCTTGCAGGCCGAAGGA 1557
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1506 GCGATGTGTTTATCACTAATAATAATGGAAATATGGCCAAGATTCTTGCAGGCCGAAGGA 1565
Query 1558 GGTACATGGGGCACAAGAGGACCATCAGGCCAAATGCAAAGAAGCTCAGTGCTTTGTTCA 1617
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1566 GGTACATGGGTCACAAGAGGACCATCAGGCCAAATGCAAAGAAGCTCAGTGCATTGTTCA 1625
Query 1618 TGGACCGGGAAAAGATGGAGTGGCAAACTTTCGCCAAAAAAGTGAAATCTTGTCAGCGTG 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1626 TGGACCGGGAAAAGATGGAGTGGCAAACTTTCGCCAAAAAAGTGAAATCTTGTCAACGTG 1685
Query 1678 GATTCATGGGTGATCCAGATGAGTTCAAACCAGGACGCGGTGAGTTCCACGAGTACCCAC 1737
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1686 GATTCATGGGTGATCCAGATGAGTTCAAACCAGGACGCGGTGAATTCCACGAGTACCCGC 1745
Query 1738 AATCTTGCATATGTCAGAGACCCTTCTCTTACGACAAAACCTCAACTGACGATGAAGAAG 1797
|||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1746 AATCTTGCATTTGTCAGAGACCCTTCTCTTACGACAAAACCTCAACGGATGATGAAGAAG 1805
Query 1798 AAGACATGTCAGAAGAGAACCACAACAGCACTAGCCCTGGACATGTACATTTGTCTTCAG 1857
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1806 AAGACATGTCAGAAGAGAACCACAACAGCACCAGCCCTGGACATGTACATTTGTCTTCAG 1865
Query 1858 CAGACAATGAGCGCGACGAAGTTTTCCCTGACTAGCAAATTGGTTCTGCTGGTCACTGGA 1917
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1866 CAGACAATGAGCGCGACGAAGTTTTCCCTGACTAGCAAATTGGTTCTGA-GGTCGCTGGA 1924
Query 1918 GATTTTACTGTAACCAGCTGTTGTAAGGAGATTGATCAATCACAGGTAGATCGAGGAGAG 1977
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1925 GATTTTACTGTAACCAGCTGTTGTAAGGAGATTGATCAATCACAG-TAGATCGAGGAGAG 1983
Query 1978 GAATAGGAG-CTTCCCGCTTAGCTACTTGTTGCTTCAAGTGTTCATAGATACTTCTATCG 2036
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1984 GAATAGGAGGCTTCCCGCGTAGCTACTTGTTGCTTCAAGTGTTCATAGATACTTCTATCG 2043
Query 2037 AATAGGCATACATAACCCA-GCTCTCT-TGTTGTTTCTTTCTGATTTTGAAACACCACCA 2094
||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 2044 AATAGGCATACATAACCCAAGCTCTCTCT-TTGTTTCTTTCTGATTTTGAAACACCACCA 2102
Query 2095 AAACTCTCTCTTGTCTTGTACTTGTCTTATATTATTACCTCATATCTAGTTTTTGGTTTT 2154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2103 AAACTCTCTCTTGTCTTGTACTTGTCTTATATTATTACCTCATATCTAGTTTTTGGTTTT 2162
Query 2155 CTTTTGTATTCCTTTAGATTTCCTGAAATGTAAAATCAAGTTTTCCTCTGATTCCTAACA 2214
|||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 2163 CTTTTGTATTCCCTTAGATTTCCTGAAATGTATAATCAAGTTTTCATCTGATTCCTAACA 2222
Query 2215 TCCTTTTGTTTGTATTTCATTTTGAAAATCAGAAAATATGTGG 2257
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 2223 TCCTTTTGTTTGTATTTCATTTTGAAAATCAGAAAATATGTGG 2265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111997415895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5