BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493212
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16640.1 | Symbols: | Matrixin family protein | chr4:936724... 1997 0.0
> AT4G16640.1 | Symbols: | Matrixin family protein | chr4:9367248-9368775
REVERSE LENGTH=1528
Length=1528
Score = 1997 bits (1081), Expect = 0.0
Identities = 1287/1383 (93%), Gaps = 28/1383 (2%)
Strand=Plus/Plus
Query 1 GTAAAAATTCAGTTCACCCGACGAACCAACTTCCAAGTAGTAGTCCAAATCATAGATAGA 60
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 71 GTAAAAGTTCAGTTCACCCGACGAACCAACTTCCAAGTAGTAGTCCAAATC----ATAGA 126
Query 61 TTCTTTTGAGGTTTTAAATGTACCCTCACGTTAGAATCTACTTAACTCTTTCCCCTTTTT 120
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 127 TTCTTTTGAGGTTTTAAATGTACCCTCACGTCAGAATCTACTTAAGTCTTTCCCCTTTTT 186
Query 121 CTGTCTCTCTTTCACCTTTTCTTCTCCATTGATCTTACCTCCACGGAACTTCTTATTTAA 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 187 CTGTCTCTCTTTCACCTTTTCTTCTCCATCGATCTTACCTCCACGGAACTTCTTATTTAA 246
Query 181 ATCAAAAAGTTTTAGAATCTTTTAATCTCACGACTCACGCAGACAAATGTCTCGTAAATT 240
|||||||| || ||||||||||||||||||| || | | |||||||||||||| ||
Sbjct 247 ATCAAAAAAATTCAGAATCTTTTAATCTCACG---CA-G--G-CAAATGTCTCGTAATTT 299
Query 241 AATCTAT---AGAAACAGAGCTCTCTGTTTTGTATTAATCTTGTTCT-CTTTCCCTTACC 296
||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||
Sbjct 300 AATCTATAGAAGAAACAGAGCTCTCTGTTTTGTTTTAATCTTGTTCTGC-TTCCCTTACC 358
Query 297 GGTTTGCCGCTAGAAAC-CTGCGGGAGGCGGAAGAATCCACAGCAAAAGCAACTCAAATA 355
|||||| |||||||||| | || |||||||||| ||||||||||||||||||||||||||
Sbjct 359 GGTTTGGCGCTAGAAACAC-GCCGGAGGCGGAACAATCCACAGCAAAAGCAACTCAAATA 417
Query 356 ATCCACGTCAGCAATTCCACGTGGCATGATTTCTCTCGTCTTGTAGATGTCCAGATAGGT 415
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 418 ATACACGTCAGCAATTCCACGTGGCATGATTTCTCTCGTCTTGTAGATGTCCAAATAGGT 477
Query 416 AGCTGCGTAAACGGCGTATCAGAGCTCAAAAGATACCTCCACCGATTCGGTTACGTCAAT 475
||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGCCACGTCAGCGGCGTATCAGAGCTCAAAAGATACCTCCACCGATTCGGTTACGTCAAT 537
Query 476 GATGGCTCGGAAAGT-TTCTCCGACGTGTTCGATGGTCCGCTCGAATCGGCAATCTCTCT 534
|||||||| |||| | || |||||||||||||||||||| || |||||||||||||||||
Sbjct 538 GATGGCTCCGAAA-TATTTTCCGACGTGTTCGATGGTCCTCTGGAATCGGCAATCTCTCT 596
Query 535 GTACCAAGAAAATCTCGGTTTACCGATAACCGGAAGACTCGACACGAGTACCGTCAGTCT 594
||| |||||||||||||||||||| |||||||||||||||||||||||||| || | |||
Sbjct 597 GTATCAAGAAAATCTCGGTTTACCAATAACCGGAAGACTCGACACGAGTACAGTTACTCT 656
Query 595 CATGTCGTTACCGCGATGTGGCGTTAGCGATACGCACATGATCATCAACAACGGTGTCAT 654
||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || |
Sbjct 657 CATGTCGTTACCGCGATGTGGCGTTAGCGATACGCACATGACCATCAACAACGATTTCCT 716
Query 655 CCACACAACGGCGCATTATACGTATTTTAACGGTAAACCGAAATGGAACCGTGACACGCT 714
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 717 CCACACAACGGCGCATTATACGTATTTCAACGGTAAACCGAAATGGAACCGTGATACGCT 776
Query 715 AACCTACGCTATCTCGAAAACACACAAACTCGATTACTTGACGTCAGAAGACGTCAAAAC 774
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 777 AACCTACGCTATCTCCAAAACTCACAAACTCGATTACTTGACGTCAGAAGACGTCAAAAC 836
Query 775 CGTTTTCCGGCGAGCTTTTTCGCAGTGGTCAAGCGTGATTCCGGTGAGTTTCGAGGAAGT 834
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 837 CGTTTTCCGGCGAGCTTTTTCACAGTGGTCAAGCGTGATTCCGGTGAGTTTCGAGGAAGT 896
Query 835 TGATGATTTCTCGGCGGCGGATTTAAAGATCGGGTTCTATGCCGGTGATCACGGTGACGG 894
|| |||||| || |||| |||||||||||||| ||||| || |||||||||||||||||
Sbjct 897 CGACGATTTCACGACGGCTGATTTAAAGATCGGATTCTACGCTGGTGATCACGGTGACGG 956
Query 895 GCTTCCGTTTGACGGAGTTCTCGGGACTTTAGCACACGCTTTTGCGCCGGAGAACGGGAG 954
||||||||||||||| || || || |||||||||||||||||||||||||||||||||||
Sbjct 957 GCTTCCGTTTGACGGTGTACTTGGAACTTTAGCACACGCTTTTGCGCCGGAGAACGGGAG 1016
Query 955 GCTTCACCTCGACGCGGCGGAGACATGGGTCGTCGATGATGACTTTAAAGGATATTCCGA 1014
|||||||||||||||||||||||| ||| ||||||| |||||||| ||||||| ||| ||
Sbjct 1017 GCTTCACCTCGACGCGGCGGAGACGTGGATCGTCGACGATGACTTGAAAGGATCTTCAGA 1076
Query 1015 GGTGGCCGTTGACTTGGAGTCTGTGGCGACTCATGAGATTGGTCACTTGTTGGGATTAGG 1074
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1077 GGTGGCCGTTGACTTGGAGTCTGTGGCGACTCACGAGATCGGTCACTTGTTGGGATTAGG 1136
Query 1075 ACATAGCTCGCAGGAGTCGGCGGTTATGTACCCGAGTCTCCGGCCAAGGACCAAGAAAGT 1134
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 1137 ACATAGCTCGCAGGAGTCGGCGGTTATGTATCCGAGTCTCCGACCGAGGACCAAGAAAGT 1196
Query 1135 TGACCTTACCGTTGATGACGTCGCAGGTGTACTTAAGTTATATGGTCCGAATCCTAAACT 1194
||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1197 TGACCTTACGGTTGATGACGTGGCAGGTGTACTTAAGCTATATGGTCCGAATCCTAAACT 1256
Query 1195 ACGGTTGGATTCACTGACGCAGTCGGAAGATTCTATTAAAAACGGCACCGTATCACGA-A 1253
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1257 ACGGTTGGATTCACTAACGCAGTCGGAAGATTCTATTAAAAACGGCACCGTATCAC-ATA 1315
Query 1254 GATTCTTGTCGGGGAATTTTATCGGTTATGTTCTGTTGGTTGTT--TT-GATTCTGTTCC 1310
|||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 1316 GATTCTTGTCGGGGAATTTTATCGGTTATGTTCTGTTGGTTGTTGGTTTGATTCTTTTCC 1375
Query 1311 TATAGGGTTTATAGA-ACAAAAA-TACTGTTTTTATTCCTTTATTTATAATTAAATGTAC 1368
|||||| ||||||| | ||||| |||||||||||||| ||||||| |||||||||||||
Sbjct 1376 TATAGG-TTTATAGGCATAAAAAATACTGTTTTTATTCATTTATTTTTAATTAAATGTAC 1434
Query 1369 ATA 1371
|||
Sbjct 1435 ATA 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67519733025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5