BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493213
Length=2578
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 4071 0.0
> AT4G16630.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:9361984-9366748 REVERSE LENGTH=2861
Length=2861
Score = 4071 bits (2204), Expect = 0.0
Identities = 2467/2591 (95%), Gaps = 29/2591 (1%)
Strand=Plus/Plus
Query 1 TTTCTGAAACCTCTTAAACCCTAGCAATGTCGTCGAGTTTCTTCTTTGAGGATGCTAGTG 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 274 TTTCTGAAACCTCTTAAACCCTAGCAATGCCGTCGAGTTTCTTCTTTGAGGATGCTAGTG 333
Query 61 ACGACGAGCTCGAATTACTACGCAATCAAGAGGATAGTAGTGAGGAAGATGTAGAGGAAG 120
||||||||||||||||| |||||||||||||||| |||||||||||||| ||| ||||||
Sbjct 334 ACGACGAGCTCGAATTAATACGCAATCAAGAGGACAGTAGTGAGGAAGACGTAAAGGAAG 393
Query 121 ACGAAGCagaagagcataaatctggagaagacgaagatggagaaga-taacgaagaagat 179
|||||||||||||||| || ||||||||||||||||||||||||| || | |||||
Sbjct 394 GCGAAGCAGAAGAGCATGAAGCTGGAGAAGACGAAGATGGAGAAGAGGAA-TATGAAGAA 452
Query 180 gacgaagaagaagaagaagaagaagatgagaagCGGAAACGTGATGCTGATGCTCAATCT 239
|| || || || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 453 GAAGATGACGACGAAGAAGAAGAAGATGAGAAGCGGAAACGAGATGCTGATGCTCAATCT 512
Query 240 CCTTGGGATTTTGCATCTTATTCTAGCTCCGTTGGTGAAGAACACGCCCGCCGTCACACA 299
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 513 CCTTGGGATTTTGCATCTTACTCAAGCTCCGTTGGTGAAGAACACGCCCGCCGTCACACA 572
Query 300 ACGTCTATTGATGAAAAGATCTCTAAAGCTATTCAGCATCGTCCAGTTCCCATTTCAATa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 ACGTCTATTGATGAAAAGATCTCTAAAGCTATTCAGCATCGTCCAGTTCCCATTTCAATA 632
Query 360 gaggaagaagaggaagaagaagaagaagaagaagaagaagaagaTGCCTCCGATGCTGAA 419
| | | | | |||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 633 -A--ATG-A-A-GAAGAAGAAG-AG--GAAGAAGAAGAAGAAGATGCCTCCGATGCTGAA 683
Query 420 CCTGACAAACAAGAGGAGTATCTTTCGGAAGACGATGAAGCAGCTGAGTACAAACCAGAA 479
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 684 ACTGACAAACAAGAGGAGTATCTTTCGGAAGACGATGAGGCAGCTGAGTACAAACCAGAA 743
Query 480 GATTTTACTCCGAAGCCGTTTTTCTCTACAGTTGATGGAGTTTCATTTCATGCTGATTCT 539
||| |||||| |||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct 744 GATGCTACTCCCAAGCCGTTCTTCTCTACAGTGGATGGAGTTTCATTTCATGCTGATACT 803
Query 540 TTCATGGAGCTTAATCTCTCTCGTCCATTGCTTCGAGCTTGTGAAACCCTCGGATACAAG 599
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 804 TTCATGGAGCTTAATCTCTCTCGTCCATTGCTTCGAGCTTGTGAAACTCTCGGATACAAG 863
Query 600 AAACCTACTCCGATTCAGGCAGCTTGTATACCTTTAGCACTTACAGGGCGTGATCTTTGT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 AAACCTACTCCGATTCAGGCAGCTTGTATACCTTTAGCACTTACAGGGCGTGATCTTTGT 923
Query 660 GCCAGTGCCATCACTGGATCAGGGAAGACTGCTGCATTCGCTTTACCTACTCTTGAGAGG 719
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 GCCAGTGCCATCACTGGGTCAGGGAAGACTGCTGCATTCGCTTTACCTACTCTTGAGAGG 983
Query 720 TTGCTGTTCCGTCCCAAGCGGGTCTTTGCTACTAGAGTTCTTATTCTCACTCCGACCAGG 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 984 TTGCTGTTCCGTCCCAAGCGGGTCTTTGCTACTAGAGTTCTTATTCTCACTCCGACTAGG 1043
Query 780 GAGTTGGCTGTCCAGATTCACAGTATGATTCAGAAGCTTGCACAATTTACTGATATCAAG 839
|||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1044 GAGTTGGCCGTCCAGATTCACAGTATGATTCAGAATCTTGCACAGTTTACTGATATCAAG 1103
Query 840 TGTGGATTGATTGTAGGAGGGCTTTCTGTAAGGGAGCAAGAGGTGGTTCTGAGGTCTATG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 TGTGGATTGATTGTAGGAGGGCTTTCTGTAAGGGAGCAAGAGGTGGTTCTGAGGTCTATG 1163
Query 900 CCAGATATTGTTGTGGCGACTCCTGGGCGTATGATAGATCATTTGCGTAATTCTATGTCT 959
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1164 CCAGATATTGTTGTGGCGACTCCTGGACGTATGATAGATCATTTGCGTAATTCTATGTCT 1223
Query 960 GTTGATTTGGATGATCTAGCGGTTTTAATCCTCGATGAGGCAGACCGCCTTCTACAGACT 1019
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1224 GTTGATTTGGATGATCTAGCGGTTTTAATCCTTGATGAGGCAGACCGCCTTCTACAGACT 1283
Query 1020 GGGTTTGCCACTGAAATAACAGAGCTGGTTCGCTTATGTCCCAAGAGAAGGCAGACAATG 1079
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1284 GGGTTTGCCACTGAAATCACAGAGCTGGTTCGCTTATGTCCCAAGAGAAGGCAAACAATG 1343
Query 1080 CTCTTCTCAGCCACAATGACTGAAGAAGTCAAAGAGCTAGTCAAACTTTCCTTGAACAAA 1139
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1344 CTCTTCTCAGCCACAATGACTGAAGAAGTTAAAGAGCTAGTCAAACTTTCCTTGAACAAA 1403
Query 1140 CCGTTGCGCCTCTCAGCTGATCCATCAGCTAGAAGGCCACCAGGCTTGACTGAAGAGGTG 1199
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1404 CCGTTGCGGCTCTCAGCTGATCCATCAGCTAGAAGGCCACCAGGCTTGACTGAGGAGGTG 1463
Query 1200 GTAAGAATACGCAGGACTCGTGAGGCTAATCAGGAAGCTGTTCTTCTATCGTTGTGCACA 1259
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1464 GTAAGAATACGCAGGACTCGTGAGGCAAATCAGGAAGCTGTTCTTCTATCATTGTGCACA 1523
Query 1260 AGAACTTTTAAATCAAAAGTCATTATCTTTAGTGGAACAAAACAAGCTGCACATAGACTC 1319
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 AGGACTTTTAAATCAAAAGTCATTATCTTTAGTGGAACAAAACAAGCTGCACATAGACTG 1583
Query 1320 AAAATTCTATTCGGATTAGCTGGCCTCAAAGCAGCTGAGCTTCATGGAAACCTAACTCAA 1379
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 AAAATTTTATTCGGATTAGCTGGCCTCAAAGCAGCTGAGCTTCATGGAAACCTAACTCAA 1643
Query 1380 GCACAACGTCTTGATTCTTTGGAACTTTTCAGAAAGCAAGAGGTTGATTTTCTCATTGCT 1439
|||||||||||||||||| |||| |||||||||||||| ||||| |||||||||||||||
Sbjct 1644 GCACAACGTCTTGATTCTCTGGAGCTTTTCAGAAAGCAGGAGGTCGATTTTCTCATTGCT 1703
Query 1440 ACCGATGTAGCTGCTCGAGGACTTGACATCATTGGTGTTCAAACAGTTATAAATTATGCT 1499
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 ACCGATGTAGCCGCTCGAGGACTTGACATCATTGGTGTTCAAACAGTTATAAATTATGCT 1763
Query 1500 TGTCCTCGGGAAATAGACAGTTATGTTCACAGAGTTGGTAGAACAGCTAGGGCTGGAAGG 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1764 TGTCCTCGGGAAATAGACAGTTATGTTCACAGAGTTGGTAGAACAGCTAGGGCTGGAAGG 1823
Query 1560 GAAGGTTATGCTGTTACGTTTGTGACTGATAGTGACCGATCCCTTTTGAAAGTTATTGCA 1619
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1824 GAAGGTTATGCTGTAACGTTTGTGACTGATAGTGACCGATCCCTTTTGAAAGTCATTGCA 1883
Query 1620 AAGAAGGTGGGTTCAAAGTTGAAGAGCCGAGTCATCCCAGAGCAGTCAATTGTCAAGTGG 1679
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1884 AAGAAGGTGGGTTCAAAGTTGAAGAGCCGAGTCATCCCAGAGCAGTCAATCGTCAAGTGG 1943
Query 1680 TCTCAGATAATTGATGAAATGGAAGATCAGTATTCCGCTGTTATTTCAGCAGAGAGGGAT 1739
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1944 TCTCAGATAATCGATGAAATGGAAGATCAATATTCCGCTGTTATTTCAGCAGAGAGGGAT 2003
Query 1740 GAGCGAGCTCTAAGGAAAGCTGAAATGGAATTTGCAAAGGCGGAGAACATGCTTGAGCAC 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2004 GAGCGAGCTCTAAGGAAAGCTGAAATGGAATTTGCAAAGGCGGAGAACATGCTTGAGCAC 2063
Query 1800 AGAGATGAAATATATGCACGCCCAAAAAGAACTTGGTTCATGACAGAGAAAGAGAAGAAG 1859
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 2064 AGAGATGAAATATATGCACGCCCAAAAAGGACTTGGTTCATGACAGAGAAGGAGAAGAAG 2123
Query 1860 CTCGTGGCACAGGCTGAAAAGGATTCTGCAGGGAACCCTTCTGGAGGCGAACTAGTTAGT 1919
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2124 CTCGTGGCACAGGCTGAAAAGGATTCTGCAGGGAACCCTGCTGGAGGCGAACTAGTTAGT 2183
Query 1920 GCTGATAGAGCAGAGGACCTCAAGATGAAGGAGAAGAGAAAACGTGAACGCGAGAAGAAT 1979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2184 GCTGATAGAGCAGAGGACCTCAAGATGAAGGAGAAGAGAAAACGTGAACGCGAGAAGAAT 2243
Query 1980 CTGCCTAGGAAAAAACGTagaaagctagaagctgccagagagatgctagaagatggcgaa 2039
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2244 CTTCCTAGGAAAAAACGTAGAAAGCTAGAAGCTGCCAGAGAGATGCTAGAAGATAACGAA 2303
Query 2040 ggagaagaagccgaagaaga--a-g--g-agacgaaaagcgaggaagatcaagagggaaa 2093
|||||||||| |||||||| | | | |||||||||| ||||||||||||||||||||
Sbjct 2304 GGAGAAGAAGAGGAAGAAGACGAAGAAGGAGACGAAAAGAGAGGAAGATCAAGAGGGAAA 2363
Query 2094 gacaagaaaaaacaagagacagagaagaagGGATTGACACTAAAGGATCTTGGTTACATG 2153
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2364 GACAAGAAAAAACAGGAGACAGATAAGAAGGGATTGACACTAAAGGATCTTGGTTACATG 2423
Query 2154 AGAGCAAAAGCGGTGAAAGCAAAACAGAGAGCAATTGATTCTGGTAAGATGGAGAGACCA 2213
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2424 AGAGCAAAAGCGGTGAAAGCAAAACAGAGAGCAATTGATTCCGGTAAGATGGAGAGACCA 2483
Query 2214 ACGCCGAACAAGAAACCAAA-CCGGAGTAAACCAAGAAACCAGCCTCGAGATGAAGAGAT 2272
| |||| ||||||||| ||| ||||||||||||||||||||||||||| | |||||||||
Sbjct 2484 AAGCCGGACAAGAAAC-AAAGCCGGAGTAAACCAAGAAACCAGCCTCGTGGTGAAGAGAT 2542
Query 2273 GAAAGATCTGTTCAAGAGTGATATGAGCGAGAAGAAACAGGGCAGAGGCGGTGCCGCGGC 2332
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2543 GAAAGATCTGTTCAAGAGTGATATGGGCGAGAAGAAACAGGGCAGAGGCGGTGCCGCGGC 2602
Query 2333 TGCAGCAAAACCTAGGACGAAGTCGAAGAACTCGTTCAAGAGCAAAGCCCGATATAAGCG 2392
||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 2603 TGCAGCAAAACCTCGGACGAAGTCGAAGAACTCATTCAAGAGCAAAGCCAGATATAAGCG 2662
Query 2393 TAGGTaaaaagaaaaagcttttttgagaagatatcgaagaacaaacaaaccctagagaaa 2452
||||||||| |||||||| |||||||||||||||||||| |||| | || |||||
Sbjct 2663 TAGGTAAAAGGAAAAAGCATTTTTGAGAAGATATCGAAGGACAATCCCAC----GAGAAG 2718
Query 2453 aaagaCATTTC-TTAGCGAAGGGTTTAAACAATTTAA-TTATTGTTGTAATATCAGAATT 2510
|| |||||||| || | |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 2719 AAGGACATTTCATT-GAGAAGGGTTTAAACAATTTAAATTATTGTTGTAATATCATAATT 2777
Query 2511 TAGAACGAAACAGGTGAAGATGTTCGCAATTTTGTATT-TAC--CCTATGGTTTTTACAA 2567
|||||| |||| ||| |||||||||| |||||||| || | ||||||||||||| ||
Sbjct 2778 TAGAACAAAACTGGTTAAGATGTTCGAAATTTTGTTTTCTTTGTCCTATGGTTTTTATAA 2837
Query 2568 TCTTTTATAAA 2578
||||| |||||
Sbjct 2838 TCTTTCATAAA 2848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127975871593
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5