BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493215
Length=944
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16610.1 | Symbols: | C2H2-like zinc finger protein | chr4:... 1243 0.0
> AT4G16610.1 | Symbols: | C2H2-like zinc finger protein | chr4:9354321-9355287
REVERSE LENGTH=967
Length=967
Score = 1243 bits (673), Expect = 0.0
Identities = 878/970 (91%), Gaps = 42/970 (4%)
Strand=Plus/Plus
Query 1 ATCACATTGAGACATAGAGAGAGAGATTTGACAAAAGAAACTTATTAAAGTCTTCTAAGG 60
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATCAAATTGAGACATCGAGAGAGAGATTTGACAAAAGAAACTTATTAAAGTCTTCTTAGG 60
Query 61 TTT-ATTTTCTTGCTTTTTGTTGTGTTCTTG-TTCTTTTGGCAAAATGCAGAACAAACAC 118
||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 61 TTTCTTTTTCTTGCTTTTTGTTCTGTTCTTGTTTCTTTTGGCAAAATGCAGAACAAACAC 120
Query 119 AAATGCAAGCTTTGTTCCAAGAGTTTCTGTAATGGCAGAGCACTTGGTGGTCACATGAAG 178
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATGCAAGCTCTGTTCCAAGAGTTTCTGTAATGGCAGAGCACTTGGTGGTCACATGAAG 180
Query 179 TCTCACTTGGTCTCTTCTCAGTCGTC-GACTCGGAAGAAACTCGGTGACTCGGTCTAttc 237
|||||||||||||| |||||||| || | ||||||||||||| |||||||||||||||||
Sbjct 181 TCTCACTTGGTCTCATCTCAGTCTTCAG-CTCGGAAGAAACTAGGTGACTCGGTCTATTC 239
Query 238 ttcttcttcttcttcCTCCGATGGTAAAGCTCTCGTCTACGGGTTGCGAGAGAACCCGAG 297
||||||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||
Sbjct 240 TTCTTCTTCCTCTTCCTCCGATGGTAAAGCGCTCGCCTACGGGTTACGAGAGAACCCGAG 299
Query 298 GAAGAGTTTCCGGGTCTTTAATCCGGATCCTGAGTCCTCCACCGTTTACAACAGTGAAAC 357
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||
Sbjct 300 GAAGAGTTTCCGGGTCTTTAATCCGGATCCTGAGTCATCCACAATTTACAACAGTGAGAC 359
Query 358 AGAGACCGAACCTGAGTCCGGAGACCCGGTTAAGAAACGGGTTAGAGCATATGTTTCAaa 417
||||||||||||||| |||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 360 AGAGACCGAACCTGAATCCGGAGACCCGGTTAAGAAACGGGTCAGAGGAGATGTTTCAAA 419
Query 418 gaagaagaagaag--g-caaagagcaagag--t-----a-a----gaagcag-aa--gaC 459
||||||||||||| | ||||||| ||||| | | | |||| || || |||
Sbjct 420 GAAGAAGAAGAAGAAGGCAAAGAGTAAGAGAGTGTTTGAGAACTCGAAGAAGCAAAAGAC 479
Query 460 GAGTCACGAGTCACCAGAACCGGCGAGTTCTGTCTCTGATGGTTCTCCGGAACAAGATTT 519
| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 480 AATTCACGAGTCACCAGAACCAGCGAGTTCTGTCTCTGATGGTTCTCCTGAACAAGATTT 539
Query 520 AGCTATGTGTTTGATGATGCTGTCGAGAGATTCAAGGGAGCTTGAGATTAAACTGAAAAA 579
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 540 AGCTATGTGCTTGATGATGCTGTCAAGAGATTCAAGGGAGCTCGAGATTAAACTGAAAAA 599
Query 580 ACCGGTTTCTGAGGAGGAAGAGACCAAGCCGGAGAAAAGACATTTCCCGGAGCTCCGCCG 639
||||| |||| || ||| |||||||| |||||||||||||| |||||||| ||
Sbjct 600 ACCGG------AGGAAGA-GAGG--AAGCCGGAAAAAAGACATTTCCCTGAGCTCCGTCG 650
Query 640 CTGTATGATAGATCTGAATCTTCCTCCGCCGCAAGACGCCGAAGCTGTCACCGTCGTTTC 699
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 651 CTGTATGATAGATCTGAATCTTCCTCCGCCGCAAGAAGCTGAAGCTGTCACCGTCGTTTC 710
Query 700 AGCCATATAAAGGTTTCAGAGAT-TAGAGTTCCATCAAAAA---TCAAAGAATCTTGATG 755
||||||||||||||||||||| | |||||| ||||||||| ||||||||||||||||
Sbjct 711 AGCCATATAAAGGTTTCAGAG-TCTAGAGTAACATCAAAAAAAATCAAAGAATCTTGATG 769
Query 756 ATTTGGTTTGTCTTCAAGATTATTATTCTTTATTAGAAAAAACCGTTTATTGGTTTTGGA 815
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 770 ATTTGGTTTGTCTTCAAGATAATTATTCTTTATTAGAGAAAACCGTTTATTGGTTTTGGA 829
Query 816 ATCTTTGGGATGATATTATTATCAAACAATGTACTTTTGATGTAAGACAACCaaaaaaaa 875
||||||||||| ||||||| | |||||||||||||||||||||||||||| || || ||
Sbjct 830 ATCTTTGGGATCATATTATCA--AAACAATGTACTTTTGATGTAAGACAAC-AACAACAA 886
Query 876 aaaa-aaaGAAGCAAGAAAGAAACTAGCTCTGTTTCTAGTTTTCTTAACAATTTGAGCTT 934
||| |||||| | | || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 887 AAACCAAAGAAACCA-AAGGAA-CTAGCTCTGTTTCTAGTTTTCTTAACAATTTGAGCTT 944
Query 935 TCTTGAATAT 944
|||||| |||
Sbjct 945 TCTTGATTAT 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46165181093
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5