BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg493215 Length=944 Score E Sequences producing significant alignments: (Bits) Value AT4G16610.1 | Symbols: | C2H2-like zinc finger protein | chr4:... 1243 0.0 > AT4G16610.1 | Symbols: | C2H2-like zinc finger protein | chr4:9354321-9355287 REVERSE LENGTH=967 Length=967 Score = 1243 bits (673), Expect = 0.0 Identities = 878/970 (91%), Gaps = 42/970 (4%) Strand=Plus/Plus Query 1 ATCACATTGAGACATAGAGAGAGAGATTTGACAAAAGAAACTTATTAAAGTCTTCTAAGG 60 |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 ATCAAATTGAGACATCGAGAGAGAGATTTGACAAAAGAAACTTATTAAAGTCTTCTTAGG 60 Query 61 TTT-ATTTTCTTGCTTTTTGTTGTGTTCTTG-TTCTTTTGGCAAAATGCAGAACAAACAC 118 ||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 61 TTTCTTTTTCTTGCTTTTTGTTCTGTTCTTGTTTCTTTTGGCAAAATGCAGAACAAACAC 120 Query 119 AAATGCAAGCTTTGTTCCAAGAGTTTCTGTAATGGCAGAGCACTTGGTGGTCACATGAAG 178 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AAATGCAAGCTCTGTTCCAAGAGTTTCTGTAATGGCAGAGCACTTGGTGGTCACATGAAG 180 Query 179 TCTCACTTGGTCTCTTCTCAGTCGTC-GACTCGGAAGAAACTCGGTGACTCGGTCTAttc 237 |||||||||||||| |||||||| || | ||||||||||||| ||||||||||||||||| Sbjct 181 TCTCACTTGGTCTCATCTCAGTCTTCAG-CTCGGAAGAAACTAGGTGACTCGGTCTATTC 239 Query 238 ttcttcttcttcttcCTCCGATGGTAAAGCTCTCGTCTACGGGTTGCGAGAGAACCCGAG 297 ||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| Sbjct 240 TTCTTCTTCCTCTTCCTCCGATGGTAAAGCGCTCGCCTACGGGTTACGAGAGAACCCGAG 299 Query 298 GAAGAGTTTCCGGGTCTTTAATCCGGATCCTGAGTCCTCCACCGTTTACAACAGTGAAAC 357 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || Sbjct 300 GAAGAGTTTCCGGGTCTTTAATCCGGATCCTGAGTCATCCACAATTTACAACAGTGAGAC 359 Query 358 AGAGACCGAACCTGAGTCCGGAGACCCGGTTAAGAAACGGGTTAGAGCATATGTTTCAaa 417 ||||||||||||||| |||||||||||||||||||||||||| |||| | |||||||||| Sbjct 360 AGAGACCGAACCTGAATCCGGAGACCCGGTTAAGAAACGGGTCAGAGGAGATGTTTCAAA 419 Query 418 gaagaagaagaag--g-caaagagcaagag--t-----a-a----gaagcag-aa--gaC 459 ||||||||||||| | ||||||| ||||| | | | |||| || || ||| Sbjct 420 GAAGAAGAAGAAGAAGGCAAAGAGTAAGAGAGTGTTTGAGAACTCGAAGAAGCAAAAGAC 479 Query 460 GAGTCACGAGTCACCAGAACCGGCGAGTTCTGTCTCTGATGGTTCTCCGGAACAAGATTT 519 | |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 480 AATTCACGAGTCACCAGAACCAGCGAGTTCTGTCTCTGATGGTTCTCCTGAACAAGATTT 539 Query 520 AGCTATGTGTTTGATGATGCTGTCGAGAGATTCAAGGGAGCTTGAGATTAAACTGAAAAA 579 ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 540 AGCTATGTGCTTGATGATGCTGTCAAGAGATTCAAGGGAGCTCGAGATTAAACTGAAAAA 599 Query 580 ACCGGTTTCTGAGGAGGAAGAGACCAAGCCGGAGAAAAGACATTTCCCGGAGCTCCGCCG 639 ||||| |||| || ||| |||||||| |||||||||||||| |||||||| || Sbjct 600 ACCGG------AGGAAGA-GAGG--AAGCCGGAAAAAAGACATTTCCCTGAGCTCCGTCG 650 Query 640 CTGTATGATAGATCTGAATCTTCCTCCGCCGCAAGACGCCGAAGCTGTCACCGTCGTTTC 699 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 651 CTGTATGATAGATCTGAATCTTCCTCCGCCGCAAGAAGCTGAAGCTGTCACCGTCGTTTC 710 Query 700 AGCCATATAAAGGTTTCAGAGAT-TAGAGTTCCATCAAAAA---TCAAAGAATCTTGATG 755 ||||||||||||||||||||| | |||||| ||||||||| |||||||||||||||| Sbjct 711 AGCCATATAAAGGTTTCAGAG-TCTAGAGTAACATCAAAAAAAATCAAAGAATCTTGATG 769 Query 756 ATTTGGTTTGTCTTCAAGATTATTATTCTTTATTAGAAAAAACCGTTTATTGGTTTTGGA 815 |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 770 ATTTGGTTTGTCTTCAAGATAATTATTCTTTATTAGAGAAAACCGTTTATTGGTTTTGGA 829 Query 816 ATCTTTGGGATGATATTATTATCAAACAATGTACTTTTGATGTAAGACAACCaaaaaaaa 875 ||||||||||| ||||||| | |||||||||||||||||||||||||||| || || || Sbjct 830 ATCTTTGGGATCATATTATCA--AAACAATGTACTTTTGATGTAAGACAAC-AACAACAA 886 Query 876 aaaa-aaaGAAGCAAGAAAGAAACTAGCTCTGTTTCTAGTTTTCTTAACAATTTGAGCTT 934 ||| |||||| | | || ||| ||||||||||||||||||||||||||||||||||||| Sbjct 887 AAACCAAAGAAACCA-AAGGAA-CTAGCTCTGTTTCTAGTTTTCTTAACAATTTGAGCTT 944 Query 935 TCTTGAATAT 944 |||||| ||| Sbjct 945 TCTTGATTAT 954 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46165181093 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5