BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493218
Length=1847
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16580.1 | Symbols: | Protein phosphatase 2C family protein... 2909 0.0
> AT4G16580.1 | Symbols: | Protein phosphatase 2C family protein
| chr4:9340993-9342846 REVERSE LENGTH=1854
Length=1854
Score = 2909 bits (1575), Expect = 0.0
Identities = 1761/1851 (95%), Gaps = 12/1851 (1%)
Strand=Plus/Plus
Query 1 TTCTTTCGTGCAATTTGTGATCTCTTCTTTCAGAAAATTTTCTGGATTCTAGCCAATTTC 60
|||||||||| ||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 1 TTCTTTCGTGAAATTTGTCATCTCTTCTTTCAGAAACTTATCTGGATTCTAGCCAATTTC 60
Query 61 TCTTGTGACTTAGAACACATTATCTTCTCCGGAGGGTTGTGAAAAAAGAGACGTTT-TTG 119
| ||||||||| | |||||||||||||| || || ||| |||||||| ||| | |
Sbjct 61 TGTTGTGACTTTG---ACATTATCTTCTCCAGAAGGAGGTG--AAAAGAGA-ATTTGTGG 114
Query 120 GTCCTGGTAAGTTCCGAATTCGTCTTTGTTTGAGCTCTGAGTTTTAAGGGTTTGTGTTCG 179
||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |
Sbjct 115 GTCCTGGTAAGTTCCGAATTCGTATTTGATTGAGCTCTGAGTTTCAAGGGTTTGTGTTGG 174
Query 180 ATCAATCTTTAGA-TCGTTGGTGAAAAGTGTTTAAATCGACGAAAGAAGTGATGCTTTGG 238
||||||||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||
Sbjct 175 ATCAATCTTTAGATTCGTTGGTG-AAAGCGTTTAAATCGACGAAAAAAGTGATGCTTTGG 233
Query 239 AAGATATGATCTTCTCTATCTCTGGTTATTACTGGGTTTCGAGATT-GTGCTGCTTAAGA 297
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 234 AAGATATGATCTTCTCTATCTCTGGTTATTACTGGGTTTCGAGATTCTTG-TGCTTAAGA 292
Query 298 TGTTACCTGTGAGAGAAGGTCTTCAGAAACAAGTTAAGATTTTGATTGGCTTAGGGAATT 357
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 293 TGTTACCTGTGAGAGAAAGTCTTCAGAAACAAGTTAAGATTTTGATTGGATTAGGGAATT 352
Query 358 TAGGGTTTGGTGGTTATAGAGGATTGCACTCTAGATTTACTAACCCTAACGGGTTTTTAG 417
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 353 TAGGGTTTGGTGGTTATAGAGGATTGTACACTAGATTTACTAACCCTAACGGGTTTTTAG 412
Query 418 AACCTGCGAGCTCTGATTTGTTGTTGATTAACGAAAGGAGGAACCTTTCTGTTGTTGGTG 477
|||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 413 AACCAGCTAGCTCTGATTTGTTGTTGATTAACGAAAGGAGGAATCTTTCTGTTATTGGTG 472
Query 478 CTGTTTCTCGAACTTTCTCTGTTCCTTCAGTATCTGGTCCAGCCTTTCAGGTTTGTGGAT 537
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 473 CTGTTTCTCGAACTTTCTCTGTTCCTTCTGTATCTGGTCCGGCCTTTCAGGTCTGTGGAT 532
Query 538 ATCATATTGATCTTTTGCTTTCGGATCCGTGTAAATCAATGGCAAGTTTAGGTTCTAAAT 597
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 533 ATCACATTGATCTTTTGCTTTCGGATCCGTGTAAATCAATGGCGAGTTTAGGTTCTAAGT 592
Query 598 CTTTGTTTGTGGATCGTCGTTGTGATTCTCTTGTTTCAAAGCGTTTCACTGGTGGTATGG 657
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 593 CTTTGTTTGTGGATCGTCATTCTGCTTCTCTTGTTTCAAAGCGTTTCACTGGTGGTATGG 652
Query 658 TATCTGGAGATGGTCTTAACCGTGGAAGAATCAGTATGAGACTCAGAGGAAAAGATCACC 717
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 653 TATCTGGAGATGGTCCTAACCGTGGAAGAATCAGTATGAGACTCAGAGGTAAAGATCACA 712
Query 718 AGGAGAAGTCTACGATCTATGCATATTTTGCTTATAGAGGTGCGAAGAGATGGATTTATT 777
| |||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||
Sbjct 713 ATGAGAAGTCTACGATCTGTGCGTATTTTGCTTATAGAGGTGCTAAGAGATGGATTTATT 772
Query 778 TGAATCAGCAAAGAAGAGGAATGGGATTTAGAGGCTTGCATAGCTCACTATCTAATCGCT 837
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 773 TGAATCAGCAAAGAAGAGGAATGGGATTTAGAGGCTTGCATAGCTCACTCTCTAATCGCT 832
Query 838 TATCAGCTGGGAATGCGCCTGATGTCTCTTTAGATAACTCTGTCACTGAAGAACAGGTTA 897
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 833 TATCAGCTGGGAATGCGCCTGATGTCTCTTTAGATAACTCTGTTACTGACGAACAGGTTA 892
Query 898 GAGATTCTTCGGATTCTGTAGCGGATAAGCTATGTACTAAGCCCCTGAAGCTTGTCTCGG 957
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 893 GAGATTCTTCGGATTCTGTAGCGGCTAAGCTATGTACTAAGCCTCTGAAGCTTGTCTCGG 952
Query 958 GGTCGTGTTATCTACCGCATCCTGATAAAGAGGCGACTGGGGGAGAAGATGCTCACTTTA 1017
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||
Sbjct 953 GGTCGTGTTATCTACCGCATCCTGATAAAGAGGCCACTGGGGGAGAGGATGCACATTTTA 1012
Query 1018 TCTGTGCAGAGGAGCAAGCATTGGGTGTGGCAGATGGTGTGGGAGGTTGGGCGGAGCTCG 1077
||||||| || ||||||||||| |||||||||||||||||||| |||||||| ||||| |
Sbjct 1013 TCTGTGCTGAAGAGCAAGCATTAGGTGTGGCAGATGGTGTGGGGGGTTGGGCAGAGCTTG 1072
Query 1078 GTATTGATGCAGGTTACTATTCTCGGGAGCTTATGTCTAACTCAGTGAATGCAATCCAAG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GTATTGATGCAGGTTACTATTCTCGGGAGCTTATGTCTAACTCAGTGAATGCAATCCAAG 1132
Query 1138 ACGAGCCTAAAGGTTCGATTGATCCAGCCAGAGTATTGGAAAAAGCTCATACTTGCACAA 1197
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 ATGAGCCTAAAGGTTCGATTGATCCAGCCAGAGTATTGGAAAAAGCTCATACTTGCACAA 1192
Query 1198 AGTCACAAGGGTCTTCAACAGCTTGCATCATAGCCTTAACCAACCAGGGACTTCATGCAA 1257
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 AGTCGCAAGGGTCTTCAACAGCTTGCATCATAGCCTTAACCAACCAGGGACTTCATGCAA 1252
Query 1258 TCAACTTAGGCGACAGCGGGTTCATGGTTGTCCGTGAAGGGCACACGGTTTTCCGTTCCC 1317
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1253 TCAATTTAGGCGACAGCGGGTTCATGGTTGTTCGTGAAGGGCATACGGTTTTCCGTTCCC 1312
Query 1318 CCGTTCAACAGCATGACTTCAACTTCACCTATCAGCTGGAGAGTGGAAGAAATGGTGATT 1377
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1313 CTGTTCAACAGCATGACTTCAACTTCACCTATCAGCTGGAGAGTGGAAGAAACGGCGATT 1372
Query 1378 TGCCAAGCTCAGGTCAGGTTTTCACTGTTGCTGTCGCTCCTGGAGATGTTATAATAGCTG 1437
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1373 TGCCAAGCTCAGGTCAGGTTTTCACTGTTGCTGTCGCTCCTGGAGACGTCATAATAGCTG 1432
Query 1438 GAACAGATGGATTATTCGACAACCTGTACAACAACGAGATCACAGCCATAGTGGTTCACG 1497
|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GAACAGATGGGTTGTTTGACAACCTGTACAACAACGAGATCACAGCCATAGTGGTTCACG 1492
Query 1498 CTGTGAGAGCCAACATAGATCCTCAGGTAACAGCACAGAAGATTGCAGCATTGGCGCGAC 1557
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1493 CTGTGAGAGCCAACATAGATCCCCAGGTAACAGCGCAGAAGATTGCAGCATTGGCGCGAC 1552
Query 1558 AAAGAGCACTGGACAAAAACAGACAAACTCCATTCTCGACAGCAGCACAAGATGCTGGCT 1617
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 AAAGAGCACAGGACAAAAACAGACAAACTCCATTCTCGACAGCAGCACAAGATGCTGGCT 1612
Query 1618 TCAGATACTACGGAGGTAAGCTTGATGACATTACAGTTGTTGTCTCTTATGTGGCGGCTT 1677
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 TCAGATACTACGGTGGTAAGCTTGATGACATTACAGTTGTTGTCTCTTATGTGGCGGCTT 1672
Query 1678 CGAAAGAAGAAGGAAAACATTGATGAAGAGACAAATACAGATGTGTCATGTGTTGAGTTA 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 CGAAAGAAGAAGGAAAACATTGATGAAGAGACAAATACAGATGTGTCATGTGTTGAGTTA 1732
Query 1738 TAAAGTTTGTGTTTTGCAGAAACCTCTCTTGTTTTGCTTAATGGTTTGTGAGCATTCTCA 1797
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1733 TAAAGTTTGTGTTTTGCAGAGACCTCTCTTGTTTTGCTTAATGGTTTGTGAGCATTCTCA 1792
Query 1798 TCTGATTTTATTTGAtttttttGATATATAT-GTAAATAAAAGAGAAAGAG 1847
||||||| ||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1793 TCTGATTATATTTGATTTTTTTGATATATATTGTAAATAAAAGATAAAGAG 1843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91415192445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5