BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493219
Length=692
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16566.1 | Symbols: HINT4 | histidine triad nucleotide-bindi... 955 0.0
> AT4G16566.1 | Symbols: HINT4 | histidine triad nucleotide-binding
4 | chr4:9334622-9335968 REVERSE LENGTH=776
Length=776
Score = 955 bits (517), Expect = 0.0
Identities = 578/608 (95%), Gaps = 2/608 (0%)
Strand=Plus/Plus
Query 38 TCCAAACGTAAGAATAATGGCGGGAGCGAATCAGGCGTGTATCTTCTGTGAGATCGTGCG 97
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 69 TCCAAACGTAAGAATTATGGCGGGAGTGAATCAGGCGTGTATCTTCTGTGAGATCGTGCG 128
Query 98 AAATCCAACCACCACTCGTCTCCTTCACACCGATGAGAAAGTCATCGCCTTTCAAGATAT 157
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 129 AAATCCAACCACTACTCGTCTCCTTCACACCGATGAGAAAGTCATCGCCTTTCAAGACAT 188
Query 158 CAAACCTGCCGCCCAGAGGCACTATTTGGTGATTCCAAAAGAACACATTCCTACTGTGAA 217
||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 189 CAAGCCTGCAGCCCAGAGGCACTATTTGGTGATTCCAAAAGAACATATTCCTACTGTGAA 248
Query 218 TGACCTTCAGAGAAGAGATGAAGACTATTCACTAGTAAGACACATGCTTAGTGTGGGACA 277
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 249 TGACCTTCAGAGAAGAGATGAAGACTACTCACTTGTAAGACACATGCTTAGTGTGGGACA 308
Query 278 AGAACTGTTGCGGAAAGATGCTCCTCAAAACATTCATAGATTTGGTTTTCACCAGCCACC 337
| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 309 ACAACTGTTGCAGAAAGATGCTCCTCAAAGCATTCATAGATTTGGTTTTCACCAGCCACC 368
Query 338 ATTTAACAGTGTTGATCATCTCCATCTCCACTGTTTTGCTTTGCCTTATGTGCCCAGATG 397
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 369 ATTTAACAGTGTTGATCATCTCCATCTCCACTGTTTTGCATTGCCTTATGTGCCCAGATG 428
Query 398 GAAAGCCATCAAGTACAAGCCTTTGGGACCTTTGGGTGGATTTATTGAAGCAGAGACACT 457
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 429 GAAAGCCATCAAGTACAAGTCTTTGGGACCTTTGGGTGGATTTATTGAAGCCGAGACACT 488
Query 458 GCTGGAGAAGATAAGGCCTCTTCTTTCAAAGGTTTAACTGAACCCAACTTACGTAACTGC 517
||| ||||||||||||||||||||||||||||| |||||||||||||||| |||| ||
Sbjct 489 GCTAGAGAAGATAAGGCCTCTTCTTTCAAAGGTGTAACTGAACCCAACTTGTTTAACCGC 548
Query 518 ATTGCCTTGCTTCTCTTTGCTAAAACTGTGGAATATCTCTTTTCTATTCTTTTGCCGGGA 577
||||| |||||||||||||||||||||||| |||||||||||||||||||||||| || |
Sbjct 549 ATTGCGTTGCTTCTCTTTGCTAAAACTGTGCAATATCTCTTTTCTATTCTTTTGCTGGCA 608
Query 578 AATCTGTTGT-CAAATGCCAAATATTATTGGGGATTTTGTATATGAAAGAAGGATGTGTC 636
||||||| | |||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 609 AATCTGT-GAACAAATGCCAAATATTATTAGAGATTTTGTATATGAAAGAAGGATGTGTC 667
Query 637 AAGTAATT 644
||||||||
Sbjct 668 AAGTAATT 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33506176049
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5