BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493225
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16515.1 | Symbols: RGF6 | Encodes a root meristem growth fa... 765 0.0
> AT4G16515.1 | Symbols: RGF6 | Encodes a root meristem growth
factor (RGF). Belongs to a family of functionally redundant
homologous peptides that are secreted, tyrosine-sulfated, and
expressed mainly in the stem cell area and the innermost
layer of central columella cells. RGFs are required for maintenance
of the root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4),
At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830
(RGF8) and At5g64770 (RGF9). | chr4:9305254-9305763
REVERSE LENGTH=510
Length=510
Score = 765 bits (414), Expect = 0.0
Identities = 482/513 (94%), Gaps = 12/513 (2%)
Strand=Plus/Plus
Query 1 ACACCAATTAACAACATTTCAAACTATT-TTTGTCTTGCTCTAGTCTCATCTCCCTGTAT 59
||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||
Sbjct 1 ACACCAATTAACAACATTTCAAACT-TTCTTTGTCCTGCTCTAGTCTCATCTCCCTGTAT 59
Query 60 ACAGACACAGC-TCATAT-TACAAGTATCTTaagaacaagaagaagaagaaaagaagTCA 117
||||||||||| | |||| |||||||||| ||||||||||||||||| || ||||||||
Sbjct 60 ACAGACACAGCAT-ATATACACAAGTATCTCAAGAACAAGAAGAAGAATAAGAGAAGTCA 118
Query 118 TGTCTTGCTCTGGGAGGAGTGGACTCGTGATGGTGTTTTGTTTCATTCTTCTGCTTTTGT 177
||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 119 TGTCTTGCTCTTTGAGGAGTGGACTCGTGATAGTGTTCTGTTTCATTCTTCTGCTTTTGT 178
Query 178 CTTCCAATGTTGGATGTGCCGCTGCCGCTCGTCGGTTAGGGTCTCATAAG---CATCATC 234
|||||||||||||||||||| ||||||||||||| ||| |||| |||||| |||||||
Sbjct 179 CTTCCAATGTTGGATGTGCCTCTGCCGCTCGTCGTTTAAGGTCACATAAGCATCATCATC 238
Query 235 ACAAGGTTGCTTCTTTGGACGTCGTCAATGGTGGAGAAAGGAGGCGAGCGTTGGGTGGAG 294
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 239 ACAAGGTTGCTTCTTTGGACGTCTTCAATGGTGGAGAAAGGAGGCGGGCGTTGGGTGGAG 298
Query 295 TCGAGACAGGGGAAGAAGTAGTGGTCATGGATTATCCTCAGCCTCATCGTAAGCCTCCCA 354
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 299 TCGAGACAGGGGAAGAAGTAGTAGTCATGGATTATCCTCAGCCTCATCGTAAGCCTCCGA 358
Query 355 TCCACAACGAGAAGTCTTAATTACCCGATCCATATAT-GC--TCCTCTCTAAATATATCA 411
||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 359 TCCACAACGAGAAGTCTTAATTACCCGATCCATATATACCAGT-CTCTCTAAATATATCA 417
Query 412 TACTGTTATATGCATATGCATTCACCATGTTGGTGGTTGTAATGACTCTTGTGCTATCTA 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TACTGTTATATGCATATGCATTCACCATGTTGGTGGTTGTAATGACTCTTGTGCTATCTC 477
Query 472 TATATATATTCATGACCAACTTCTTTGTTCTCT 504
|||||||||||||||||||||||||||||||||
Sbjct 478 TATATATATTCATGACCAACTTCTTTGTTCTCT 510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24062156413
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5