BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg493227

Length=571
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16500.1 | Symbols:  | Cystatin/monellin superfamily protein...   634    0.0  


> AT4G16500.1 | Symbols:  | Cystatin/monellin superfamily protein 
| chr4:9301388-9302022 REVERSE LENGTH=635
Length=635

 Score =  634 bits (343),  Expect = 0.0
 Identities = 453/502 (90%), Gaps = 24/502 (5%)
 Strand=Plus/Plus

Query  79   aaaaaaggttaaggaaaaac-aaaa-aTGATGATGAAGTCGTTGATCTATCTCTCTCTCA  136
            ||||||||||||||  |||| |||| |||||||||||||||||||||| |||||||||||
Sbjct  116  AAAAAAGGTTAAGG--AAACGAAAATATGATGATGAAGTCGTTGATCTGTCTCTCTCTCA  173

Query  137  TCCTCCTCCCACTTGTCTCCGTCGTGGAAGGTCTC---GGTGGTGGTGGTCTCGGTAGCA  193
            |||||||||||||||||||||||||||||||||||   |||||||||||||| |||||| 
Sbjct  174  TCCTCCTCCCACTTGTCTCCGTCGTGGAAGGTCTCGGTGGTGGTGGTGGTCTTGGTAGCC  233

Query  194  GGAAGCCGATCAAGAATGTATCGGATCCGGACGTTGTTGCGATCGCCAAGTATGCCATCG  253
            |||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct  234  GGAAGCCGATCAAGAATGTATCTGATCCGGATGTTGTTGCGGTCGCCAAGTATGCCATCG  293

Query  254  ATGAGCATAACAAACAATCGAAGGAGCATTTGGTTTTCGTCAAGGTTGTCGAGGGAACGA  313
            | || ||||||||  | ||||||||| | |||||||||||||||||||| ||||||||||
Sbjct  294  AGGAACATAACAAGGAGTCGAAGGAGAAGTTGGTTTTCGTCAAGGTTGTGGAGGGAACGA  353

Query  314  CACAAGTGGTCTCCGGTACAAAGTACGATCTGAAAATTGCGGCGAAGGATGGTGGTGGTA  373
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  354  CGCAAGTGGTCTCCGGTACAAAGTACGATCTGAAAATTGCGGCGAAGGATGGTGGTGGTA  413

Query  374  AGATCAAGAACTATGAGGCTGTTGTTGTTGAAAAGCTTTGGCTTCATTCTAAGACCCTTG  433
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  414  AGATCAAGAACTATGAGGCTGTTGTTGTTGAAAAGCTTTGGCTTCATTCTAAGAGCCTTG  473

Query  434  AGTCCTTCGAGGCGGCATAGATCTTT----GGATTTTTGTTAGATCGATCTCTCTCTGAC  489
            |||| ||| |||||  ||||||||||    |||||||||| ||||||||||||||||  |
Sbjct  474  AGTCTTTCAAGGCGTTATAGATCTTTAATTGGATTTTTGT-AGATCGATCTCTCTCT--C  530

Query  490  TCTCTCGGGTATATCTATATCTAGCTTTTGATGATTTGAGATTTTGAGACATTTATGTTG  549
                  ||||||||||||  ||||||||||||||||||||| | |||  | ||| |||||
Sbjct  531  ------GGGTATATCTAT--CTAGCTTTTGATGATTTGAGACTCTGA--CGTTTGTGTTG  580

Query  550  TTGTTGGTAATATTTGTGGAAT  571
            ||||||||||||| ||||||||
Sbjct  581  TTGTTGGTAATATCTGTGGAAT  602


 Score =  132 bits (71),  Expect = 4e-30
 Identities = 80/84 (95%), Gaps = 2/84 (2%)
 Strand=Plus/Plus

Query  1   ATTGAGATCTCCGTAAATTTCTGGAACTAT-ATGCCCACATTCCAAGGCAAAACCAAATC  59
           |||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct  4   ATTGAGATCTCCGTAAATTTCTGGAACTATCA-GCCCACATTCCAAAGCAAAACCAAATC  62

Query  60  TACAAGTCTTGTCTATATaaaaaa  83
           |||||||||||||||||||| |||
Sbjct  63  TACAAGTCTTGTCTATATAATAAA  86



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27427844262


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5