BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493233
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16460.1 | Symbols: | unknown protein; Has 58 Blast hits to... 1279 0.0
> AT4G16460.1 | Symbols: | unknown protein; Has 58 Blast hits
to 58 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa
- 30; Fungi - 4; Plants - 16; Viruses - 0; Other Eukaryotes
- 8 (source: NCBI BLink). | chr4:9284910-9286773 FORWARD
LENGTH=1153
Length=1153
Score = 1279 bits (692), Expect = 0.0
Identities = 826/888 (93%), Gaps = 20/888 (2%)
Strand=Plus/Plus
Query 1 AGAAAACGTTCGTCGAATCCTC--ATCCCTTAATCGCCGACGCTTC-AACTCGGTGACGT 57
|||||||||||||||||||||| | ||||| |||||||||||||| |||||||||||||
Sbjct 256 AGAAAACGTTCGTCGAATCCTCTGACCCCTTTATCGCCGACGCTTCAAACTCGGTGACGT 315
Query 58 ATGTTCAGAGTCATATGCGAGCAATAGAATGGAGGGAGAGGCAGTGGAATCTAGGAGTAG 117
|||||||||||||||||||||| |||||||||||||||||||||| ||||||| | | ||
Sbjct 316 ATGTTCAGAGTCATATGCGAGCCATAGAATGGAGGGAGAGGCAGTTGAATCTA-G-G-AG 372
Query 118 TAGTAGGAAGGAGCAGGAAAGGGAAAGACGGCGTCTACGAGACAGAGAAAGAAGACAATC 177
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 373 TAGTAGGAAGGAGCAGGAAAGGGAAAGAAGGCGTCTACGAGACAGAGAAAGAAGACAATC 432
Query 178 TATGAGCCAAGATGAGAGGGAAAGGCATTTGGCACGGCGCCGCAAGAACTATCAGCTGAG 237
|||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 433 AATGAGCCAGGATGAGAGGGAAAGGCATTTGGCTCGGCGCCGCAAGAACTACCAGCTGAG 492
Query 238 AAGGCAGAAAGCTGAGATAAACCGCCTCGACTCTCAGATCCAAGCAATCAGTGGAGGCAG 297
|||||||| ||||||| |||||||||| ||||||| |||||||||||||| ||||||||
Sbjct 493 AAGGCAGAGAGCTGAGGTAAACCGCCTTGACTCTCCGATCCAAGCAATCACTGGAGGCAA 552
Query 298 CCAAGCAGCAGTG-ATCTCACCGCCTGATTCTGGAGCCAGCTTGGTTGAGTCTGATCAGA 356
|||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 553 CCAAGCAGCACTGAAT-TCACCGCCTGATTCTGGAGCCAGCTTTGTTGAGTCTGATCAGA 611
Query 357 GTGTGGCAATACCAGTGGAAGAGCTGGCTAA-ACTGATGGGGACTATACGGCTGACTCGT 415
|||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |||
Sbjct 612 GTGTGGTAATACCAGTGGAAGAGCTGGCTAAGA-TGATGGGGACTATACGGCTGACACGT 670
Query 416 CTGAAACATCTGGCGAGGACACTGAACAAGTCCAGCTCTAGTACTGGTGCAGAGTCAAGC 475
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 671 CTGAAACATCTGGCGAGGACACTGAACAAGTCCAGCACTAGTACTGGTGCAGAGTCAAGC 730
Query 476 AACACAGGAGCAACAGACGCAAAGACAAGATGTGCCATGTCAAATGGGCTACGTCTGAGT 535
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 731 AACACAGGAGCAACAGACGCAAAGACAAGATGTGCAATGTCAAATGGGCTACGTCTGAGT 790
Query 536 CG-AGTAAAACGACTGGTGAGAGCAAAGGGCCAGCAAGAGAGGTTCTTTTCACATTCCCA 594
|| | ||||||||||||||||| |||||||||||| |||| |||| |||||||||||
Sbjct 791 CGGA-TAAAACGACTGGTGAGATTTAAGGGCCAGCAACTGAGGATCTTGTCACATTCCCA 849
Query 595 AACACAAGAACCTCAGCTTCACTAGAGTTCACAACTTGAAAGAGAACCTCATGAAT-T-A 652
||||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||| | |
Sbjct 850 AACACCAGAACCTCAGCTTCACTAGAGTTGACAACTTGAACGAGAACCTCATCAATATTA 909
Query 653 TTGTTTGTAAAAGTGAAAGTATTATTGTTTTGGAGA-C-ACATCTAAGAAA-CTGACCAT 709
|||||||||||||||||||||||||| ||||||||| | ||| ||| |||| ||||||||
Sbjct 910 TTGTTTGTAAAAGTGAAAGTATTATTCTTTTGGAGATCCACAGCTAGGAAAACTGACCAT 969
Query 710 ATTTGTTTTCAAATACAAGTGGGATTACATGATATTCTTCACTTTTCTTTTCTTGTCACA 769
||||||||| |||||||||||||||||||| | |||||||| |||| |||| ||||||||
Sbjct 970 ATTTGTTTTGAAATACAAGTGGGATTACATTACATTCTTCA-TTTT-TTTT-TTGTCACA 1026
Query 770 GCCATCTCCTATCCGGCTTTTATCATTTGTAGTTCGGAAGAAGAAACGAGAGTGAGATAT 829
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1027 GCCATCTCCTATACGGCTTTTATCATTTGTAGTTCGGAAGAAGAAACGAGAATGAGATAT 1086
Query 830 CATAGCTGAGTAATCTCTTTTGCTGAACAAGATAATAAGTTTGACAAT 877
||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1087 CATAGTTGAGTAATCTGTTTTGCTGAACAAGATAATAAGTTTGACAAT 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42799493244
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5