BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493235
Length=461
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16447.1 | Symbols: | unknown protein; Has 30201 Blast hits... 745 0.0
> AT4G16447.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9278787-9279389
FORWARD LENGTH=603
Length=603
Score = 745 bits (403), Expect = 0.0
Identities = 443/462 (96%), Gaps = 4/462 (1%)
Strand=Plus/Plus
Query 1 AAACCCTAGCAAGACTCTCTCCACGACTGATCATATCATTACGTCATGAGTTCAATAGCA 60
||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 1 AAACCCTAGCAAGACTCTCTCTAAGAC---TCATATCATTACGTCATGAGTTCAATAGCA 57
Query 61 AGAGACCGAAAGGAACAAATGGTGATCCAGTCTTCGATCGTCTTGCTTCAAGAAAGATTC 120
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 58 AGAGACCGAAAGGAACAAATGGTGATCCATTCTTCAATCGTCTTGCTTCAAGAAAGATTC 117
Query 121 AGACAACTTCAGAGAGCAAGAGAGTTAAGAGCTGAGCGAGAGCTCCTAAACCCTAAACCT 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 118 AGACAACTTCAGAGAGCAAGAGAGTTAAGAGCTGAACGAGAGCTCCTAAACCCTAAACCT 177
Query 181 AACCACCAAGACAACATCTTGCAATATTACAGCGAACCCACAAGTTTCGGCTTCTTTCAG 240
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 178 AACCACCAAGACAACATCTTGCAATATTACAGCGAACCCACTAGTTTCGGTTTCTTTCAG 237
Query 241 TTTCTACCTACAAACTCTCAAACATCTTCGTCACAGCAGCTCCTCTCCCTCTCCTTATGC 300
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 238 TTTCTACCTATAAACTCTCAAACATCTTCGTCACAGCAGCTCCTATCCCTCTCCTTATGC 297
Query 301 CCACACCCCACCTCTGAATCCATTGAAAAGCCAAGCTTTTGTCATCAGTGGCCAAATAAA 360
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TCACACTCCACCTCTGAATCCATTGAAAAGCCAAGCTTTTGTCATCAGTGGCCAAATAAA 357
Query 361 GACGACAAGAAGATGGGTGGGATTGATCGATACGACGACGTTGATACGTCTCTGCATCTC 420
|| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 358 GATGACAAGAAGATGGGTGGGATTGATCGATACGACGATGTTGACACGTCTCTGCATCTC 417
Query 421 TAAA-CTAAAATAATGGTTCCTCCATCTTTTTGAAGTTCTAA 461
|||| |||||||||| ||||||||||||||||||||||||||
Sbjct 418 TAAAACTAAAATAATTGTTCCTCCATCTTTTTGAAGTTCTAA 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21967006313
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5