BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493236
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16444.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1190 0.0
> AT4G16444.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9274443-9276327
REVERSE LENGTH=996
Length=996
Score = 1190 bits (644), Expect = 0.0
Identities = 728/769 (95%), Gaps = 3/769 (0%)
Strand=Plus/Plus
Query 1 CAATTTTAGACGTTAACCTCCGCTTGAAGGCTTGAAATTTCTGTGAATCTACGACGGAGA 60
|||||| ||||||||||||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct 8 CAATTTCAGACGTTAACCTCGGCTTGAAGGCTTCAAATTTCTGTGAATCCACGACGGAGA 67
Query 61 CTATTGGTGAATTACATCAGAATCAGTAATCAGCGAAAGGG-TAATGGAAGGAGAGAAGC 119
|||||||||||||| | |||||||||||||||| |||||| ||||||||||||||||||
Sbjct 68 TTATTGGTGAATTACGTTAGAATCAGTAATCAGCAAAAGGGTTAATGGAAGGAGAGAAGC 127
Query 120 TAATAGAAGATCGCGGCTTTTTGGCTGCTCCTCTGACCTTCTTCGTCGTCGTTGTCTTCC 179
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 128 TTATAGAAGATCGCGGCTTTTTGGCTGCTCCTCTGACCTTCGTCGTCGTCGTTGTCTTCC 187
Query 180 AATTGCTATCTAAGTGGCTTGACCAATTGAAGAAGAAAGGGTCGAAGAACACGAGGGAAT 239
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 AATTGCTATCCAAGTGGCTTGACCAATTGAAGAAGAAAGGGTCGAAGAACACGAGGGAAT 247
Query 240 CAGAGCTACGATCTGAAATTAAGCAGCTTTTGAGAGAGGCTAGTGTATTGTCTCAGCCTG 299
||||||| ||| | ||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 248 CAGAGCTGCGAACCGAAATTAAGCAGCTTTTGAGAGAGGCTAGTGCATTGTCTCAGCCAG 307
Query 300 CCACGTTTGCGCAAGCAGCAAAACTTAGGAGGTCAGCAGCTACTAAAGAGAAAGAACTTG 359
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 308 CCACATTTGCGCAAGCAGCGAAACTTAGGAGGTCAGCAGCTACTAAAGAGAAAGAACTTG 367
Query 360 CACAATATCTGGAGCAGCATAACAAAGAAATAAAGCTGTCATACGATATGTATGGAAAGG 419
|||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||
Sbjct 368 CACAATATCTGGAGCAGCATCACAAAGAAATCAAGCTTTCATACGATATGTATGGGAAGG 427
Query 420 TTTTACTTGCTTCAAAGGTTGTGATATACCTAATCTTGGTATTGTGTTTCTGGAGGACTC 479
| | |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 428 GTCTGCTTGCTTCGAAGGTTGTGATATACCTAATCTTGGTATTGTGCTTCTGGAGGACTC 487
Query 480 CAATTGCCATTATCGCTAAGCAACTTGTTCAACCGTTTGGGACTTTGTTATCTTGGGGAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 CAATTGCCATTATCGCTAAGCAACTTGTTCAACCGTTTGGGACTTTGTTATCTTGGGGAA 547
Query 540 CAGGAGGTCACTTGACAGGCCATGTAATGGTCGGGATCATACCGTGGCTGATACTCTCAA 599
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 548 CAGGAGGTCACATGACAGGCCATGTAATGGTCGGGATCATACCGTGGCTCATACTCTCAA 607
Query 600 CCAGAGTAAGCAAATATGTGTGTAGGTTCGTGGAGTTCTAAATCACAGCCCTGAAAAGAG 659
|||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 608 ACAGAGTGAGCAAATATGTGTGTAGGTTCGTGGAGTTCTAAATCGCATCCCTGAAAAGAG 667
Query 660 TGGAGATTGGATGGTTTT-GAGTTCAAAGTTGTAGCGTTTTAGGAGACACTTGTGGCAGA 718
|| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 668 TGAAGATTGGATGGTTTTTGAGTTCAAAGTTGTAGCCTTTTAGGAGACACTTGTGGCAGA 727
Query 719 AACTGTGCCTCTCttttttttCCTAATCTTCCCTTAACAATGTATATTT 767
|| ||||| ||||||||| ||||||||||||| ||||||||||||||||
Sbjct 728 AATTGTGCTTCTCTTTTTGTTCCTAATCTTCC-TTAACAATGTATATTT 775
Score = 115 bits (62), Expect = 7e-25
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 866 TACAGTGTTGTCAATTTTTATCTTGTAACACCGACTTTGTAAAATCAGATTCAAAAGACG 925
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 928 TAC-GTGTTGTCAATTTTTATCTTGTAACACCGACTTTGTAAAATCAGATTCTAAAGACG 986
Query 926 CGTGTACTT 934
|||||||||
Sbjct 987 CGTGTACTT 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5