BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493242
Length=1846
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16420.1 | Symbols: ADA2B, PRZ1 | homolog of yeast ADA2 2B |... 2702 0.0
> AT4G16420.1 | Symbols: ADA2B, PRZ1 | homolog of yeast ADA2 2B
| chr4:9262621-9266086 REVERSE LENGTH=1959
Length=1959
Score = 2702 bits (1463), Expect = 0.0
Identities = 1592/1655 (96%), Gaps = 6/1655 (0%)
Strand=Plus/Plus
Query 197 GCATCAATGGGTCGCTCTCGAGGGAACTTCCAAAATTTCGAAGACCCTACACAGAGAACC 256
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 306 GCATCAATGGGTCGCTCTCGAGGGAACTTCCAAAATTTCGAAGACCCTACTCAGAGAACG 365
Query 257 AGGAAAAAGAAAAATGCAGCTAATGTGGAAAACTTTGAGTCTACATCTATGGTTCCAGGT 316
||||||||||||||||| ||||||||||| |||||||||||||| ||| |||| ||||||
Sbjct 366 AGGAAAAAGAAAAATGCGGCTAATGTGGAGAACTTTGAGTCTACTTCTTTGGTACCAGGT 425
Query 317 ACTGAGGGAGGAGGGAAATATAACTGCGATTATTGCCAGAAAGACATTACCGGCAAAATT 376
|||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 426 GCTGAGGGAGGAGGGAAGTATAACTGCGATTATTGCCAGAAAGACATTACTGGAAAAATT 485
Query 377 AGGATAAAGTGTGCTGTCTGTCCGGATTTTGATCTCTGTGTAGAATGTATGTCTGTTGGA 436
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 486 AGGATAAAGTGTGCTGTCTGTCCAGATTTTGATCTCTGTATAGAATGTATGTCTGTTGGA 545
Query 437 GCAGAGATTACTCCTCACAAATGTGATCACCCATACCGAGTTATGGGAAATCTAACTTTC 496
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 GCAGAGATCACTCCTCACAAATGTGATCACCCATACCGAGTTATGGGAAATCTAACTTTC 605
Query 497 CCTCTTATTTGTCCGGACTGGAGTGCGGATGATGAAATGCTTCTCCTGGAGGGACTTGAA 556
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 CCGCTTATTTGTCCTGACTGGAGTGCGGATGATGAAATGCTTCTCCTGGAGGGACTTGAA 665
Query 557 ATTTATGGCTTGGGGAACTGGGCAGAGGTCGCGGAGCATGTGGGAACGAAGAGTAAAGAA 616
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 666 ATTTATGGCTTGGGAAACTGGGCAGAGGTTGCGGAGCACGTGGGAACGAAGAGTAAAGAA 725
Query 617 CAGTGTCTTGAGCACTACAGAAACATTTATTTGAACTCACCATTTTTCCCACTTCCGGAT 676
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 726 CAGTGTCTTGAGCACTACAGAAACATCTATTTGAACTCACCATTTTTCCCACTTCCGGAT 785
Query 677 ATGTCACATGTAGCAGGGAAGAACAGAAAAGAACTTCAAGCCATGGCAAAAGGACGCATT 736
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 786 ATGTCACATGTAGCAGGGAAGAACAGAAAAGAACTTCAAGCCATGGCTAAAGGACGCATT 845
Query 737 GATGACAAGAAAGCAGAGCAGAACATGAAAGAAGAGTACCCATTCTCTCCTCCTAAAGTC 796
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 846 GATGACAAGAAAGCAGAGCAGAACATGAAAGAAGAGTACCCGTTCTCTCCTCCTAAAGTC 905
Query 797 AAAGTTGAAGACACACAAAAAGAGTCTTTTATAGACAGGAGTTTTGGAGGGAAGAAACCT 856
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 906 AAAGTTGAAGACACACAAAAAGAGTCTTTTGTAGACAGAAGTTTTGGAGGGAAGAAACCT 965
Query 857 GTCGCCACCTCGGTAAACAACTCTTTGGTTGAATTGAGTAATTACAACCAGAAAAGAGAA 916
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 966 GTTTCCACCTCGGTAAACAACTCTTTGGTTGAGCTGAGTAATTACAACCAGAAAAGAGAA 1025
Query 917 GAGTTTGACCCTGAATATGACAATGACGCTGAGCAACTCTTGGCTGAGATGGAGTTCAAA 976
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1026 GAGTTTGACCCTGAATATGACAATGATGCTGAGCAACTCTTGGCGGAGATGGAGTTCAAA 1085
Query 977 GAGAACGATACTCCTGAGGAACATGAGCTGAAGCTGCGTGTGTTGCGTATCTATTCTAAA 1036
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1086 GAGAACGATACTCCTGAAGAACATGAACTGAAGCTGCGTGTGTTGCGTATCTATTCAAAA 1145
Query 1037 AGGCTTGATGAGAGGAAACGTAGAAAAGAATTCATAATAGAAAGAAACCTGTTGTACCCA 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 AGGCTTGATGAGAGGAAACGTAGAAAAGAATTCATAATAGAAAGAAACCTGTTGTACCCA 1205
Query 1097 AATCCCTTTGAGAAGGACCTGTCTCAGGAGGAGAGAGTGCAGTGTCGACGTTTGGACGTT 1156
|||||||||||||||||||||||||||||||||| ||| || || |||||||||||||||
Sbjct 1206 AATCCCTTTGAGAAGGACCTGTCTCAGGAGGAGAAAGTACAATGCCGACGTTTGGACGTT 1265
Query 1157 TTTATGCGTTTTCATTCAAAAGAGGAGCACGATGAGCTACTCCGTAATGTTGTAAGCGAG 1216
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1266 TTTATGCGTTTTCATTCAAAAGAGGAGCACGACGAGCTACTCCGTAATGTTGTAAGCGAG 1325
Query 1217 TACCGCATGGTGAAACGGCTCAAAGATCTCAAGGAAGCTCAAGTGGCAGGTTGTCGTTCG 1276
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1326 TACCGCATGGTGAAACGGCTCAAAGATCTCAAGGAAGCTCAAGTGGCAGGGTGTCGTTCA 1385
Query 1277 ACGGCTGAAGCagagaggtatctggggaggaagaggaagagagaaaacgaagaagggatg 1336
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1386 ACGGCTGAAGCAGAGAGGTATCTGGGAAGGAAGAGGAAGAGAGAAAACGAAGAAGGGATG 1445
Query 1337 aacagagggaaagagagCGGTCAATTTGGTCAAATAGCAGGGGAGATGGGCTCTAGACCT 1396
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1446 AACAGAGGGAAAGAGAGCGGTCAATTTGGTCAAATTGCAGGGGAGATGGGCTCTAGACCA 1505
Query 1397 CCTGTGCAAGCATCTTCAAGCTATGTGAATGATTTGGACCTGATTGGATTCACGGAGTCG 1456
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1506 CCTGTGCAAGCTTCTTCAAGCTATGTGAATGATTTGGACTTGATTGGGTTCACGGAGTCG 1565
Query 1457 CAACTGCTGTCCGAATCCGAGAAGCGTCTCTGCAGCGAGGTCAAGTTGGTTCCACCGGTT 1516
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 CAACTGCTGTCTGAATCCGAGAAGCGTCTCTGCAGCGAGGTCAAGTTGGTTCCACCGGTT 1625
Query 1517 TATCTACAGATGCAACAAGTGATGTCACATGAGATATTCAAAGGGAATGTGACGAAGAAG 1576
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1626 TATCTACAGATGCAACAAGTGATGTCACATGAGATATTCAAAGGGAATGTAACGAAGAAG 1685
Query 1577 TCGGATGCATATAGCCTGTTCAAGATCGATCCAACCAAAGTGGATCGAGTTTATGATATG 1636
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1686 TCGGATGCATATAGCCTTTTCAAGATTGATCCAACCAAAGTGGATCGAGTTTATGATATG 1745
Query 1637 CTTGTGAAGAAGGGTATTGCTCAAGTTTAAGGCTTATGTAGTGTTGTATCATATATATAT 1696
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1746 CTTGTGAAGAAGGGTATTGCTCAACTTTAAGGCTTGTGTAGTGTTGTATCATATATATAT 1805
Query 1697 --GTG--AGCTCTATTGAGTTATTTGTTGACATTCCCTTGTTTATTACACCTTGTTAAAA 1752
||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1806 ATGTGTGAGCTCTAATGAGTTATTTGTTGACATTCCCTTGTTTATTACACCTTGTCAAAA 1865
Query 1753 TTAGTTTGTAATAGAAAAACGATTAAGTTATCCACAGATTGTGAAAAGAGATAAGGTGGA 1812
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1866 TTAGTTTGTAATAGAAAAACGATTAAGTTATCCACAGATTGTGAAAAGAGATAAGGTGAA 1925
Query 1813 TGAGAGCCACACAATCTAAACTCAAC-GTTTTAGT 1846
| ||||||||||||||||||| ||| ||||||||
Sbjct 1926 TCAGAGCCACACAATCTAAAC-CAAATGTTTTAGT 1959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91364991900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5