BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493244
Length=641
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16410.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 972 0.0
AT4G16400.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 811 0.0
> AT4G16410.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF751 (InterPro:IPR008470);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr4:9261866-9262601 REVERSE LENGTH=736
Length=736
Score = 972 bits (526), Expect = 0.0
Identities = 609/648 (94%), Gaps = 10/648 (2%)
Strand=Plus/Plus
Query 1 TCCTACAAGGAAAGCAAGAAGTGAGATGACGATGATGTCTCTCCCCAAAATGAAG-CTAT 59
|||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1 TCCTACAAGGAAAGGAAGAAGTGAGATGACGATGATGTCTCTCCCCAAAATG-AGACTAT 59
Query 60 CTTGTCTGCAACCTCACCTCCATTTTAGCTGTAGCAGATCATTAGCAGCAGCTCTAGCTT 119
||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 60 CTTGTCTGCAACCACACCTCCATTTTACCAGTAGCAGATCAATAGCAGCAGCTCTAGCTT 119
Query 120 TTCCGAGCTCAAACATAAGGAACAGAACATCATGTCTTGTTCGGTGCGGCTCAGGCAGAA 179
|||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 120 TTCCAAGCTCAAGCATAAGGAACAGAACATCATGTCTTGTTCGGTGTGGCTCAGCCAGAA 179
Query 180 GAAGATTAACTACGAAAAGCACCAGAAGCAGCAAGCTTGAAAAG-GCACAA---CAGCCT 235
||||||| ||||||||||| | ||||| ||||||||||| |||| |||||| | |||
Sbjct 180 GAAGATTGACTACGAAAAGTAGCAGAAACAGCAAGCTTG-AAAGAGCACAACCTCCTCCT 238
Query 236 CTGGGTTTGGAGCGACACTGGAGACATGCTGTGGTTGGTGGAGTCTCTGTAGGGTTGCTG 295
||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 239 CTGGGTTTGGAACGGCACTGGAGATATGCTGTGGTTGGTGGAGTCTCTGTAGGGTTGATG 298
Query 296 ATGGTTTTGGTATTGGGAATGGATGCAGAGAAAGCTATGGCGCTTGGACCAGAAGGTCCT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ATGGTTTTGGTATTGGGAATGGATGCAGAGAAAGCTATGGCGCTTGGACCAGAAGGTCCT 358
Query 356 TTAATGGAAGAGTTTTGGGACAACGTTAGAAGGTACGGTCTTTACGCTCTTACGGTTAGC 415
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 359 TTAATGGAAGAGTTTTGGGACAACGTTAGAAGGTACGGTCTTTACGCTCTCACGGTTAGC 418
Query 416 ACTGGAGCTCTCTCTGCTGTCTTTGAGCCCATCTTCGAACTCCTCAAGAACCCAATCTCC 475
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 419 ACTGGAGCTCTCTCTGCTGTCTTTGAGCCCATCTTTGAGCTCCTCAAGAACCCAATCTCC 478
Query 476 GCCATTCTCATTCTGCTCATCTTAGGTGGAAGCTTCTATATCGTCTCTCAAGTTGTCTCC 535
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 479 GCCATTCTCATTCTACTCATCTTAGGTGGTAGCTTCTATATCGTCTCTCAAGTTGTTTCT 538
Query 536 GCCATGATTGGTGTCAACGAATTCGCTTATGAATACAGTTATTGACCAAACTATAGTTCG 595
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 539 GCCATGATTGGTGTCAACGAATTCGCTTATCAATACAGTTATTGACCAA-CTATAGTTTG 597
Query 596 TTTTTGTTCTCTTCATTAATACTCTGCTTTTATGCT--Gttttttttt 641
|||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 598 TTTTTGTTTTCTTCATTAATACTCTGCTTTTATGCTCTGTTTTTTTTT 645
> AT4G16400.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G13175.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:9260564-9262670 FORWARD LENGTH=1225
Length=1225
Score = 811 bits (439), Expect = 0.0
Identities = 505/536 (94%), Gaps = 7/536 (1%)
Strand=Plus/Minus
Query 1 TCCTACAAGGAAAGCAAGAAGTGAGATGACGATGATGTCTCTCCCCAAAATGAAG-CTAT 59
|||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1156 TCCTACAAGGAAAGGAAGAAGTGAGATGACGATGATGTCTCTCCCCAAAATG-AGACTAT 1098
Query 60 CTTGTCTGCAACCTCACCTCCATTTTAGCTGTAGCAGATCATTAGCAGCAGCTCTAGCTT 119
||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 1097 CTTGTCTGCAACCACACCTCCATTTTACCAGTAGCAGATCAATAGCAGCAGCTCTAGCTT 1038
Query 120 TTCCGAGCTCAAACATAAGGAACAGAACATCATGTCTTGTTCGGTGCGGCTCAGGCAGAA 179
|||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1037 TTCCAAGCTCAAGCATAAGGAACAGAACATCATGTCTTGTTCGGTGTGGCTCAGCCAGAA 978
Query 180 GAAGATTAACTACGAAAAGCACCAGAAGCAGCAAGCTTGAAAAG-GCACAA---CAGCCT 235
||||||| ||||||||||| | ||||| ||||||||||| |||| |||||| | |||
Sbjct 977 GAAGATTGACTACGAAAAGTAGCAGAAACAGCAAGCTTG-AAAGAGCACAACCTCCTCCT 919
Query 236 CTGGGTTTGGAGCGACACTGGAGACATGCTGTGGTTGGTGGAGTCTCTGTAGGGTTGCTG 295
||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 918 CTGGGTTTGGAACGGCACTGGAGATATGCTGTGGTTGGTGGAGTCTCTGTAGGGTTGATG 859
Query 296 ATGGTTTTGGTATTGGGAATGGATGCAGAGAAAGCTATGGCGCTTGGACCAGAAGGTCCT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 ATGGTTTTGGTATTGGGAATGGATGCAGAGAAAGCTATGGCGCTTGGACCAGAAGGTCCT 799
Query 356 TTAATGGAAGAGTTTTGGGACAACGTTAGAAGGTACGGTCTTTACGCTCTTACGGTTAGC 415
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 798 TTAATGGAAGAGTTTTGGGACAACGTTAGAAGGTACGGTCTTTACGCTCTCACGGTTAGC 739
Query 416 ACTGGAGCTCTCTCTGCTGTCTTTGAGCCCATCTTCGAACTCCTCAAGAACCCAATCTCC 475
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 738 ACTGGAGCTCTCTCTGCTGTCTTTGAGCCCATCTTTGAGCTCCTCAAGAACCCAATCTCC 679
Query 476 GCCATTCTCATTCTGCTCATCTTAGGTGGAAGCTTCTATATCGTCTCTCAAGTTGT 531
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 678 GCCATTCTCATTCTACTCATCTTAGGTGGTAGCTTCTATATCGTCTCTCAAGTTGT 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30944234552
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5