BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493247
Length=1013
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16380.1 | Symbols: | Heavy metal transport/detoxification ... 1269 0.0
AT1G49420.1 | Symbols: | Heavy metal transport/detoxification ... 139 5e-32
> AT4G16380.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr4:9254555-9256219 FORWARD LENGTH=1112
Length=1112
Score = 1269 bits (687), Expect = 0.0
Identities = 912/1010 (90%), Gaps = 57/1010 (6%)
Strand=Plus/Plus
Query 1 tctctctctctctTGAAGTAGACTCTAAGCTAAAGCCACCGTCAGA-TTTCAGATCTCAG 59
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 TCTCTCTCTCCCTTGAAGTAGACTCTAAGCTAAAGCCACCGTCAGATTTTCAGATCTCAG 60
Query 60 ATCTCAGCTCTTCATTCGAAGCCATGGCCGAGAAGGGCAAGGAAAAGGTAACTATGATGA 119
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 61 ATCTCAGCTCTTCATTCGACGCCATGGCCGAGAAGGGCAAAGAAAAGGTAACTATGATGA 120
Query 120 AGTTGAAGGTGGATCTTGATTGTGCCAAGTGTTACAAGAAAGTGAAGAAGGTTCTTTGCA 179
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 AGTTGAAGGTGGATCTTGATTGTGCCAAATGTTACAAGAAAGTGAAGAAGGTTCTTTGCA 180
Query 180 AATTCCCTCAAATAAGAGACCAATTGTTCGATGAAAAGTCCAACATTGTCATCATCAAAG 239
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 181 AGTTCCCTCAAATAAGAGACCAATTGTTCGATGAAAAGTCCAACATTGTTATCATCAAGG 240
Query 240 TGGTTTGCTGCAGTCCTGAGAAGATCATGGACAAACTCTGTTCCAAAGGCGGCGGCTCGA 299
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGTTTGCTGTAGTCCTGAGAGGATCATGGACAAACTCTGTTCCAAAGGCGGCGGCTCGA 300
Query 300 TAAAGACCATCGAGATCGTCGAGCCACCCAAGCCTCCTCAGCCACAAGCCCAACAACCAC 359
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 TAAAGACCATTGAGATCGTCGAGCCACCCAAGCCTCCTCAGCCACAACCCCAACAACCAC 360
Query 360 CTCCCCAGAAACCTAAAGATGCTCAGCCTAAAGCTCCTGAGAAGCCTAAGGAACCTgaaa 419
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CT---CAGAAACCTAAAGATGCTCAGCCTAAAGCTCCTGAGAAGCCTAAGGAACCTGAAA 417
Query 420 agccgaaacagcctgaaaagcccaaagaacccgaaaagccgaagcaacccgaaaagccca 479
|||| |||||||||||||||| ||||| || || ||||| || || || ||||||||||
Sbjct 418 AGCCAAAACAGCCTGAAAAGCTTAAAGAGCCAGAGAAGCCCAAACAGCCAGAAAAGCCCA 477
Query 480 aagAACCCGCTC---C-A-GCA-CCCGCA---GC-CAAAC-CC-GCACCCGCTCCCGC-- 525
||||||||| | | ||| |||||| || | | | || ||||| || |||||
Sbjct 478 AAGAACCCGAAAAGACGAAGCAACCCGCACCCGCTCCAGCTCCCGCACCAGCACCCGCAG 537
Query 526 CC---CT-GCGCCAGCACCCGCTCC---T---GC-CC--C---GAAGCAGCCGGGACCGC 569
|| | || || || |||||||| | || || | |||||||||||||||||
Sbjct 538 CCAAACCCGCACCCGCTCCCGCTCCAGCTCCCGCACCTGCCCCGAAGCAGCCGGGACCGC 597
Query 570 CTGTG---GCGATCCCGATGATGCCGCAAGGGCAGCCAGCAATGTGTTGTGGGCCCTACT 626
| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 598 CACCGCAAGCGATCCCGATGATGCCGCAAGGGCAGCCAGCAATGTGTTGCGGGCCCTACT 657
Query 627 ACGACGGATACGGAGGGCCATCGTTCAATGGATATGGAATGCCGCCGCCGCAGCCTTACG 686
|||| ||||||||||||||| | ||||||||||||||||||||||||| |||||||||
Sbjct 658 ACGATGGATACGGAGGGCCAGCATTCAATGGATATGGAATGCCGCCGC---AGCCTTACG 714
Query 687 AGTGCTATGGCCGACCAGTCTACGAGAGCTGGGGTGGGGGCTGCCCACCACCACC---TG 743
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 715 AGTGCTATGGACGACCAGTCTACGAGAGCTGGGGTGGGGGCTGCCCACCACCACCACCTG 774
Query 744 CTTATAGACAATGCCACGTCACTAGATGTGATTACTTCAGCGAAGAGAATCCACAGAGCT 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CTTATAGACAATGCCACGTCACTAGATGTGATTACTTCAGCGAAGAGAATCCACAGAGCT 834
Query 804 GTTCCATCATGTGAATT-GACTTCTTTATCTTTAAATCCTT-ATTTTTCCTTTAATCttt 861
||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 835 GTTCCATCATGTGAATTTGACTTCTTTATCTCTAAATCCTTTATTTTTCCTTTAATCTTT 894
Query 862 ttttCTT---ATACAAATAATAATTAAAACAAATATATAGAGAGATGTTTACGTGTAATG 918
||||||| ||||||||||||||||||| ||||||| |||| |||||||||||||||
Sbjct 895 TTTTCTTCTTATACAAATAATAATTAAAA-AAATATA--GAGA--TGTTTACGTGTAATG 949
Query 919 TTGTGATTAAGAGAACCAATAAGGAAGGAAGGATCGTTGTATTTTGTAAA 968
|||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 950 TTGTGATTAAGAGAACCAATAAGGAAGGAA----CGTTGTATTTTGTAAA 995
Score = 75.0 bits (40), Expect = 1e-12
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 968 AAAGAAAATTGTTTCATTTTCTTCTTTATATGAACCAATAATAGTA 1013
||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1052 AAAGAAATTTGTTTCATGTTCTTCTTTATATGAACCAATAATAGTA 1097
> AT1G49420.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr1:18287859-18288650 REVERSE LENGTH=570
Length=570
Score = 139 bits (75), Expect = 5e-32
Identities = 172/216 (80%), Gaps = 17/216 (8%)
Strand=Plus/Plus
Query 83 ATGGCCGAGAAGGGCAAGGAAAAGGTAACTAT-GATGAAGTTGAAGGTGGA---TCTTGA 138
|||||||||||||| ||||| |||||||| || |||||| |||||| ||| |||| |
Sbjct 1 ATGGCCGAGAAGGGTAAGGAGAAGGTAAC-ATGGATGAAATTGAAGACGGAGCCTCTT-A 58
Query 139 -TTGTGCCAAGTGTTACAAGAAAGTGAAGAAGGTTCTTTGC-A-AATTCCCTCAAATAAG 195
| | ||| || | |||||| ||||||| ||||| | | | | |||||| ||||
Sbjct 59 GTAACGAAAAGAATTTCTCGAAAGTCAAGAAGGCTCTTT-CGAGCA-TACCTCAAGTAAG 116
Query 196 AGACCAATTGTTCGATGAA-AAGTCCAACATTGTCATC-ATCAAAGTGGTTTGCTGCAGT 253
||||||| |||||| ||| || |||||| |||| | |||||||||||||||||||||
Sbjct 117 AGACCAAAAGTTCGAAGAAGAA-ACCAACACGGTCA-CAATCAAAGTGGTTTGCTGCAGT 174
Query 254 CCTGAGAA-GATCATGGACAAACTCTGTTCCAAAGG 288
|||||||| | | |||||||||||||||||||||||
Sbjct 175 CCTGAGAAAG-TGATGGACAAACTCTGTTCCAAAGG 209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49631337236
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5