BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493251
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16350.1 | Symbols: CBL6, SCABP2 | calcineurin B-like protei... 1354 0.0
> AT4G16350.1 | Symbols: CBL6, SCABP2 | calcineurin B-like protein
6 | chr4:9242320-9243912 REVERSE LENGTH=930
Length=930
Score = 1354 bits (733), Expect = 0.0
Identities = 810/847 (96%), Gaps = 5/847 (1%)
Strand=Plus/Plus
Query 1 GAAGCTTCTTTACACGCTAACGAGGAAAAAAGAAAAGGCATGGAAATAGTGAGTTTTGGG 60
|||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |||||||
Sbjct 1 GAAGCTTCTTTACACGCTAACGAGAAAAAAAGAATAGGCATGGACATAGTGACTTTTGGG 60
Query 61 GGAGAGGATGATGCAATGTTTAGATGGAATAAAGCACTTATCCTTAATTCTGTTGACTTG 120
|||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 61 AGAGATGATGATGCAATGTTTAGATGGATTAAAGCACTTAGCCTTAATTCTGTTGACTTG 120
Query 121 TTGTGATTCTGATCTTCCCAAGGGTCTTCAGAACCCTAAAGATGTGGCTAGAGGCACTGT 180
||||||| |||||| |||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 121 TTGTGATGCTGATCCTCCCAAGGTTCGTCAGAACCCTAAGGATGTGGCTAGAGGCACTGT 180
Query 181 GTTTACTGTCAATGAGATTGAAGCTCTTTACGAACTGTTCAAGAGCATTAGCAAAGACGG 240
|||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 GTTTACAGTGAATGAGATTGAAGCTCTTTACGAACTGTTCAAGAGCATTAGCAAAAACGG 240
Query 241 GCTTATCGATAAGGAACAATTTCAATTGGTACTATTCAAGATGAACACAACGAGAAGCCT 300
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 GCTTATCGACAAGGAACAATTTCAATTGGTACTATTCAAAATGAACACAACGAGAAGCCT 300
Query 301 TTTTGCTGATAGGGTGTTTGACTTGTTTGATACCAAGCATACTGGGATTCTAGATTTTGA 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 TTTTGCTGATAGGGTGTTTGACTTGTTTGATACCAAGAATACTGGGATTCTAGATTTTGA 360
Query 361 AGCCTTTGCTCGTTCTCTTTCGGTCTTTCACCCCAATGCTAAATTTGAGGATAAGATTGA 420
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 AGCCTTTGCTCGTTCACTTTCGGTCTTTCACCCTAATGCTAAATTTGAGGATAAGATTGA 420
Query 421 GTTTTCTTTCAAGCTGTATGATCTGAAGCAGCAAGGTTATATAAAGAGACAGGAGGTGAA 480
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 GTTCTCTTTCAAGCTGTATGATCTGAATCAGCAAGGTTATATAAAGAGACAGGAGGTGAA 480
Query 481 GCAAATGGTTGTGCGGACTCTAGCTGAATCTGGCATGAACCTTTCCGATCATGTGATTGA 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 GCAAATGGTTGTGCGGACTCTAGCTGAATCTGGCATGAACCTTTCTGATCATGTGATTGA 540
Query 541 GAGCATCATAGACAAGACATTTGAAGAAGCTGATACTAAACTGGATGGGAAGATTGATAA 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 541 GAGCATCATAGACAAGACATTTGAAGAAGCTGATACTAAACTGGACGGGAAGATTGATAA 600
Query 601 GGAAGAGTGGCGGAGTCTTGTGTTGCGCCATCCCTCTCTGTTGCAGAACATGAGCCTTCA 660
|||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 601 GGAAGAGTGGAGGAGTCTTGTGTTGCGCCACCCCTCTCTGTTACAGAACATGAGCCTTCA 660
Query 661 ACATCTCAAAGACGTAACGAAGACGTTTCCAAATTTTGTATTTCACACTATAGTGACAGA 720
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACATCTCAAAGACGTAACAAAGACGTTTCCAAATTTTGTATTTCACACTATAGTGACAGA 720
Query 721 CACTCCTAGTGAGCTGGATAGATGATCAGGGATGTGAAGAAAAGACCAAAACC-TTTACA 779
||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 721 CACTCCTAGTGAGCTGGATGGATGATCAGGGATGTGAAGAAA-GACCAAAACCCTTTACA 779
Query 780 AGATCATTCATACTTGATTCT-ATCTTCTTCTCCATT-CATCTATTACAACCCTCCtttt 837
||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| ||
Sbjct 780 AGATCATTCATACTTGATTCTTATCTTCTTCTCCATTAC-TCTATTACAACCCTCCTCTT 838
Query 838 ttttttt 844
| |||||
Sbjct 839 TATTTTT 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43402303008
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5