BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493257
Length=2136
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding ... 2290 0.0
> AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding
| chr4:9206597-9214825 REVERSE LENGTH=3107
Length=3107
Score = 2290 bits (1240), Expect = 0.0
Identities = 1504/1627 (92%), Gaps = 35/1627 (2%)
Strand=Plus/Plus
Query 1 ATGAATGGTCCTCCAGATAGAGTAGATTTTCAGCCGATGCGTCCTCGGAATGGTGGAAGT 60
||||||||||| |||||||||||||||||| |||| ||| |||||| |||||||||||
Sbjct 414 ATGAATGGTCCCCCAGATAGAGTAGATTTTAAGCCTATGGGTCCTCACCATGGTGGAAGT 473
Query 61 TTTCGGCCTATGGGTTTTGCCTACGATGATGGTTTTCGTCCGATGGGTCCTAACGGTGGC 120
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 474 TTTCGGCCTATGGGGTTTGCCTACGATGATGGTTTTCGTCCAATGGGTCCTAACGGTGGT 533
Query 121 GTAGGAGGAGAAGGGACGCGGTCAATTGTTGGAGCTGGCGGTGGCAGAGGAGGATTTCGG 180
|| |||||||||||||| |||||||||||||||||| |||| | | |
Sbjct 534 GTGGGAGGAGAAGGGACACGGTCAATTGTTGGAGCT--CGGT-----A-TA--A------ 577
Query 181 TCTAACGGACCCGCGAAGTTTCCGCCTTCAGAGAGTCCAGACGGGAGGAGATTTATCGGT 240
|| | |||||||||| ||| |||||||||||||||||| |||||||||||||||||
Sbjct 578 -CT-A---TCCCGCGAAGTATCCTCCTTCAGAGAGTCCAGACAGGAGGAGATTTATCGGT 632
Query 241 AAAGCAATGGAGTCTGATTATTCTGTAAGGCCGACTACACCGCCGGTCCAACAGCCTCTT 300
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 633 AAAGCAATGGAGTCTGATTATTCTGTAAGACCGACTACACCGCCGGTCCAGCAGCCTCTT 692
Query 301 TCTGGTCAGAAACGAGGGTATCCTAGCTCAGATCATGGCAGCTATACTGGAGCTGATGTT 360
|| ||||||||| |||||||||||| |||||| |||||||||| ||||||| |||||||
Sbjct 693 TCCGGTCAGAAAAGAGGGTATCCTATCTCAGACCATGGCAGCTTTACTGGAACTGATGTC 752
Query 361 TCTGATCATAGCAGTATTGTCAAGCTTTTTGTTGGCTCCGTACCAAGGACAGCTATAGAA 420
||||||| |||||||| ||||||||||||||||| || |||||||||||||||| ||||
Sbjct 753 TCTGATCGTAGCAGTACAGTCAAGCTTTTTGTTGGATCTGTACCAAGGACAGCTACAGAA 812
Query 421 GAAGAAGTTCGTCCCTTTTTTGAAAAGCATGGAAATGTTCTGGAGGTTGCTTTGATCAAG 480
|||||| | ||||||| ||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 813 GAAGAAATCCGTCCCTATTTCGAACAGCATGGAAATGTTCTGGAGGTTGCTCTGATCAAG 872
Query 481 GACAAGAGAACTGGACAGCAGCAAGGCTGTTGTTTTGTAAAGTATGCAACTTCTAAAGAT 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 873 GACAAGAGAACTGGACAGCAGCAAGGCTGTTGTTTTGTAAAATATGCAACTTCGAAAGAT 932
Query 541 GCGGATAGAGCCATTAGAGCACTGCACAATCAGATCACTCTTCCTGGGGGAACTGGTCCT 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 GCGGATAGAGCCATCAGAGCACTGCACAATCAGATCACTCTTCCTGGGGGAACTGGTCCT 992
Query 601 GTTCAAGTTCGATATGCTGATGGGGAGAGAGAACGCATAGGCACGCTAGAGTTTAAGCTT 660
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 993 GTTCAAGTTCGATATGCTGACGGGGAGAGAGAACGCATAGGCACCCTAGAGTTTAAGCTT 1052
Query 661 TTCGTTGGTTCACTAAACAAGCAAGCCACTGAAAAAGAAGTTGAAGAGATATTTTTACAA 720
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1053 TTTGTTGGTTCACTAAACAAGCAAGCCACTGAAAAAGAAGTTGAGGAGATCTTTTTACAA 1112
Query 721 TTTGGTCGCGTAGAAGATGTCTATCTCATGCGTGATGAATATAGACAGAGTCGTGGATGC 780
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1113 TTTGGTCATGTGGAAGATGTCTATCTCATGCGGGATGAATATAGACAGAGTCGTGGATGT 1172
Query 781 GGGTTTGTTAAATATTCAAGCAAAGAGACGGCAATGGCAGCTATCGATGGTCTCAATGGA 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1173 GGGTTTGTTAAATATTCAAGCAAAGAGACGGCAATGGCAGCTATCGATGGTCTCAACGGA 1232
Query 841 ACTTATACCATGAGAGGTTGCAATCAACCATTGATTGTTCGATTTGCTGATCCAAAGAGA 900
|||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 1233 ACTTATACCATGAGAGGTTGCAATCAGCCATTGATTGTTCGGTTTGCTGAGCCAAAGAGG 1292
Query 901 CCTAAACCTGGCGAGTCAAGGGACATGACAGCTCCTGTTGGACTTGGTTCAGGGCCTCGT 960
||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 1293 CCTAAACCTGGCGAGTCAAGGGAAATGGCACCTCCTGTTGGACTTGGTTCAGGGCCTCGT 1352
Query 961 TTTCAAGTTTCAGGACAAAGGCCTACCTCTAACTTTGGTGACTCTAGTGGGGATGTAAGC 1020
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 TTTCAAGCTTCAGGACCAAGGCCTACCTCTAACTTTGGTGACTCTAGTGGGGATGTAAGC 1412
Query 1021 CACACAAATCCTTGGCGTCCAGCGAATTCACAAAACGTAGGTCCACCTAGTAACACTGGG 1080
||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||||||
Sbjct 1413 CACACAAATCCTTGGCGTCCAGCTACTTCACGAAACGTAGGCCCACCTAGTAACACTGGG 1472
Query 1081 ATCCGTGGTGCCGGAACTGACTTTTCCCCTAGACCAGGTCAAGCAACATTGCCTTCAAAT 1140
|||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1473 ATCCGTGGTGCCGGTAGTGACTTTTCCCCTAAACCAGGTCAAGCAACATTGCCTTCAAAT 1532
Query 1141 CAGGGTGGCCTGTTTGGTGGTTATGGTGTTCCTCCCCTTAATCCTCTTCCAGTCTCTGGA 1200
|||||||||| ||| |||||||||||||||||||||||||| ||||| |||||| |||||
Sbjct 1533 CAGGGTGGCCCGTTAGGTGGTTATGGTGTTCCTCCCCTTAACCCTCTCCCAGTCCCTGGA 1592
Query 1201 GTTTCATCTTCTGCCAAATTGCAACAGCAAAATCGGGCAGCTGGCCAGCAAATATCACCA 1260
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1593 GTTTCATCTTCTGCCACATTGCAACAGCAAAATCGGGCAGCTGGCCAGCATATAACACCA 1652
Query 1261 TTaaaaaaaCCTCTTCACAGTCCACAGGGTCTCCC-C-C----TACGTCC--A--C-A-T 1308
||||||||||||||||||||||||||||||||||| | | | ||||| | | | |
Sbjct 1653 TTAAAAAAACCTCTTCACAGTCCACAGGGTCTCCCTCTCCCCCTCCGTCCGCAAACTAAT 1712
Query 1309 TTCCCTGGGGCCCAGGCACCCTTGCAGAATCCTTATACTTATAGCAGCCAGTTGCCTTCC 1368
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1713 TTCCCTGGGGCCCAGGCACCCTTGCAGAATCCTTATGCTTATAGCAGCCAGTTGCCTACC 1772
Query 1369 TCTCAGCTGCCGCCACAGCAAAACGTCACTCGTGCAACTGCTCCTCAGACTCCTTTGAAC 1428
||||||||||| |||||||||||| ||| |||||||||||||||||| ||||||||||||
Sbjct 1773 TCTCAGCTGCCACCACAGCAAAACATCAGTCGTGCAACTGCTCCTCAAACTCCTTTGAAC 1832
Query 1429 ATTAATCTACGGCCAACA-CATGTGTCTTCTGCATCTGATCAATTTCCCCCTCGTTCCCA 1487
|||||||||||||||||| | ||||||||||||| ||| |||||||||||||||||||||
Sbjct 1833 ATTAATCTACGGCCAACAAC-TGTGTCTTCTGCAACTGTTCAATTTCCCCCTCGTTCCCA 1891
Query 1488 GCAGCAACCGCTACAAAAGATGCAACATCCTCCTTCTGAGCTAGCTCAGCTCTTGTCACA 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1892 GCAGCAACCGCTACAAAAGATGCAACATCCTCCTTCTGAGCTAGCTCAGCTCTTGTCGCA 1951
Query 1548 GCAAACTCAGAGTCTACAAGCAACACTCCAATCGTCTCAGCAAGCAATATCTCAGCTGCA 1607
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1952 GCAAACTCAGAGTCTACAAGCAACATTCCAATCGTCTCAGCAAGCAATTTCTCAGCTGCA 2011
Query 1608 GCAGCAG 1614
|||||||
Sbjct 2012 GCAGCAG 2018
Score = 712 bits (385), Expect = 0.0
Identities = 461/496 (93%), Gaps = 11/496 (2%)
Strand=Plus/Plus
Query 1645 TAAGTCAGAGCGT-GGTTTCTGTCAAATGTACCTGGACCGAGCATACCTCGCCTGATGGA 1703
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2170 TAAGTCAGAGCGTAGG-TTCTGTCAAATGTACCTGGACCGAGCATACCTCGCCTGATGGA 2228
Query 1704 TTTAAATATTATTACAATGGTCTAACGGGTGAAAGCAAGTGGGAAAAACCTGAGGAAATG 1763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2229 TTTAAATATTATTACAATGGTCTAACGGGTGAAAGCAAGTGGGAAAAACCTGAGGAAATG 2288
Query 1764 ATAGTGTTCGAACGAGAGCAACAGCAACAGCAACAACATCAAGAAAAGCCAACTATACAG 1823
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 2289 ATAGTGTTCGAACGAGAGCAACAGAAACAGCAACAACATCAAGAGAAGCCAACTATACAG 2348
Query 1824 CAGCCCCAGACCCAATTACAGCCGTTGCAGCAACAACCACAACAAGTTCACCAGCAATAT 1883
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2349 CAGTCCCAGACCCAATTACAGCCGTTGCAGCAACAACCACAACAAGTTCAGCAGCAATAT 2408
Query 1884 CAAGGCCAGCAATTACAGCATCCGTTTTATTCTTCACTGTATCCAACTCCAGGGTCCAGC 1943
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 2409 CAGGGCCAGCAATTACAGCAGCCGTTTTATTCTTCACTGTATCCAACTCCAGGGGCCAGC 2468
Query 1944 CATAATGCTCAGTATCCATCATTGCCAGTTGGTCAAAACAGCCAGGTA--TATATCTG-A 2000
|||||| |||||||||||||||||||||| |||||||| |||||| | ||| || | |
Sbjct 2469 CATAATACTCAGTATCCATCATTGCCAGTAGGTCAAAATAGCCAGTTTCCTATGTCAGGA 2528
Query 2001 ACCTGTGGACTTATTTTTCAGGACTATGCTCGGACACATATACCCGTGGTGGGAGCTGCT 2060
| | ||| | | | |||||| ||||||||||||||||||||||||| | |||||||
Sbjct 2529 A--T-TGGTCAGAATGCTCAGGATTATGCTCGGACACATATACCCGTGG-G--AGCTGCT 2582
Query 2061 TTAATGAATGATCTATCAAGAACTCAACAGAGACGTCAATCTCCCCAAGAACTCATGTGG 2120
| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2583 TCAATGAATGATATATCAAGAACTCAACAGAGCCGTCAATCTCCCCAAGAACTCATGTGG 2642
Query 2121 AAGAATAAAGCTTGAG 2136
||||||||||||||||
Sbjct 2643 AAGAATAAAGCTTGAG 2658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105923149950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5