BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493259
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16265.1 | Symbols: NRPB9B, NRPD9B, NRPE9B | RNA polymerases... 876 0.0
AT3G16980.1 | Symbols: NRPB9A, NRPD9A, NRPE9A | RNA polymerases... 366 1e-100
> AT4G16265.1 | Symbols: NRPB9B, NRPD9B, NRPE9B | RNA polymerases
M/15 Kd subunit | chr4:9202352-9204078 REVERSE LENGTH=625
Length=625
Score = 876 bits (474), Expect = 0.0
Identities = 537/567 (95%), Gaps = 6/567 (1%)
Strand=Plus/Plus
Query 1 CTCTCTCATGTCCGAGTGAACAAATCCCGCCAAAGATACTG-AGAGACTGATTGTGAAAT 59
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 2 CTCTCTCATGTCCGAGTGAACAAATCCCGCCAAAGATAC-GAAGAGACTGATTGTGAAAT 60
Query 60 CAAAGAAGTACTCAAAAGCTCGTTATATAAAGAAAGATTCTGCGAAGATGAGTACTATGA 119
|||||||| | ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 61 CAAAGAAGCATTCAAAAGCTCGTTATCT----AAAGATTCTGCGAAGATGAGTACTATGA 116
Query 120 AATTTTGTCGTGAATGTAATAACATTCTATATCCTAAGGAAGACAAGGAGCAATCAATCC 179
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 117 AATTTTGTCGCGAATGTAATAACATTCTATATCCCAAGGAAGACAAGGAGCAATCAATCC 176
Query 180 TCCTCTATGCGTGTCGTAATTGTGATCACCAGGAAGCAGCGGATAACAACTGTGTTTACA 239
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 177 TCCTCTATGCGTGCCGTAATTGTGATCACCAGGAAGCAGCAGATAACAATTGTGTTTACA 236
Query 240 GAAACGAGGTTCATCACTCTGTAAGTGAACAAACTCAAATCCTATCCGACGTTGCTTCTG 299
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 237 GAAACGAGGTTCATCACTCTGTAAGTGAACAAACTCAGATCCTATCTGACGTTGCTTCCG 296
Query 300 ACCCAACTCTTCCACGTACCAAGGCAGTGCGGTGTGCCAAGTGTCAACACGGCGAAGCTG 359
||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||
Sbjct 297 ACCCAACTCTTCCACGTACCAAGGCTGTGCGATGCGCCAAGTGTCAACACGGTGAAGCTG 356
Query 360 TCTTCTTCCAGGCCACTGCTAGAGGCGAAGAAGGAATGACTCTGTTTTTCGTTTGCTGCA 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TCTTCTTCCAGGCCACGGCTAGAGGCGAAGAAGGAATGACTCTGTTTTTCGTTTGCTGCA 416
Query 420 ACCCGAACTGTAGTCACCGTTGGAGAGAATAGAATGATAGAAGACTACATTTTTCAAATG 479
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 417 ACCCGAACTGTAGTCACCGTTGGAGAGAATAGATTGATAGAAGACTACATTTTTCAAATG 476
Query 480 TAACGTGTATCTGAGTTCCTCTTTATGAGTTTCATACAATTCAATTTGGAGTTTTCTGTG 539
|||||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 477 TAACGTGTATTTGTGTTCCGCTTTATGAGTTTTATACAATTCAATTTGGAGTTTTCTGTG 536
Query 540 TAAAAATATGAATACTACGGGAGTGTT 566
||||||||||||||||| | || ||||
Sbjct 537 TAAAAATATGAATACTATGAGACTGTT 563
> AT3G16980.1 | Symbols: NRPB9A, NRPD9A, NRPE9A | RNA polymerases
M/15 Kd subunit | chr3:5794436-5795827 FORWARD LENGTH=563
Length=563
Score = 366 bits (198), Expect = 1e-100
Identities = 309/362 (85%), Gaps = 10/362 (3%)
Strand=Plus/Plus
Query 94 AGATTCTGCGAAGATGAGTACTATGAAATTTTGTCGTGAATGTAATAACATTCTATATCC 153
|||||| || ||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 78 AGATTCAGCTAAGATGAGTACTATGAAATTTTGCCGCGAATGTAATAACATTCTGTATCC 137
Query 154 TAAGGAAGACAAGGAGCAATCA-ATCCTCCTCTATGCGTGTCGTAATTGTGATCACCAGG 212
|||||| ||||| || | | | |||||||||||||| || |||||||||||||||||||
Sbjct 138 TAAGGAGGACAAAGAAC-AGAAGATCCTCCTCTATGCTTGCCGTAATTGTGATCACCAGG 196
Query 213 AAGCAGCGGATAACAACTGTGTTTACAGAAACGAGGTTCATCACTCTGTAAGTGAACAAA 272
| | ||| ||||||| |||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 197 AGGTAGCTGATAACAGCTGTGTGTACAGAAACGAGGTTCATCACTCTGTAAGTGAGCGAA 256
Query 273 CTCAAATCCTATCCGACGTTGCTTCTGACCCAACTCTTCCACGTACCAAGGCAGTGCGGT 332
|||| ||| || | ||||| ||||||||||| |||||||| || |||||||| ||||| |
Sbjct 257 CTCAGATCTTAACAGACGTGGCTTCTGACCCTACTCTTCCCCGAACCAAGGCTGTGCG-T 315
Query 333 GTGC-C-AAGTGTCAACAC-GGCGAAGCTGTCTTCTTCCAGGCCACTGCTAGAGGCGAAG 389
||| | |||||||| || || || || || ||||||||||| || |||||||| ||||
Sbjct 316 -TGCTCTAAGTGTCAGCATAGG-GAGGCCGTTTTCTTCCAGGCTACGGCTAGAGGTGAAG 373
Query 390 AAGGAATGACTCTGTT-TTTCGTTTGCTGCAACCCGAACTGTAGTCACCGTTGGAGAGAA 448
|||||||||| ||||| ||| || || ||||||||||| ||| |||| || |||||||||
Sbjct 374 AAGGAATGACACTGTTCTTT-GTCTGTTGCAACCCGAATTGTGGTCATCGCTGGAGAGAA 432
Query 449 TA 450
||
Sbjct 433 TA 434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28784166231
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5