BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493268
Length=677
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16160.2 | Symbols: ATOEP16-2, ATOEP16-S | Mitochondrial imp... 1037 0.0
> AT4G16160.2 | Symbols: ATOEP16-2, ATOEP16-S | Mitochondrial import
inner membrane translocase subunit Tim17/Tim22/Tim23 family
protein | chr4:9157515-9158933 FORWARD LENGTH=762
Length=762
Score = 1037 bits (561), Expect = 0.0
Identities = 643/682 (94%), Gaps = 8/682 (1%)
Strand=Plus/Plus
Query 1 GAAGCAAGAAGTGAAGAAAGAAAGAAAAATATGGATAAGAGTGGAGGAAGAATGGTAATG 60
||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1 GAAGCAACAAGTGAAGAAAGAAAGAAAAAAATGGAGAAGAGTGGAGGAAGAATTGTAATG 60
Query 61 GATGAGATAAGAAGCTTTGAGAAGGCACACTTGTTCGATCTTGGTCATCCTCTTCTCAAC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GATGAGATAAGAAGCTTTGAGAAGGCACACTTGTTCGATCTTGGTCATCCTCTTCTTAAC 120
Query 121 CGTATCGCCGATTCCTTCGTTAAAGCCGCCGGAGTGGGAGCGTTACAAGCGGTATCGAGG 180
|||||||| |||||||||||||||||||||||||||||||| |||||||| || || |||
Sbjct 121 CGTATCGCAGATTCCTTCGTTAAAGCCGCCGGAGTGGGAGCTTTACAAGCCGTGTCAAGG 180
Query 181 GAAGCTTACTTTACGGTGGTTGAGGGGGCAGGGTTTGACTCGAACAACGTTGGTCCACCG 240
|||||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 181 GAAGCTTACTTTACCGTGGTTGACGGGGCAGGTTTTGACTCGAACAACGTGGGTCCACCG 240
Query 241 TCGGAGATTACAGGGAACAAGAAACATAGGTTCCCTAATCTCAGAGGGGAAAGCAGCAAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGGAGATTACAGGGAACAAGAAACATAGGTTCCCTAATCTCAGAGGGGAAAGCAGCAAA 300
Query 301 TCTCTTGATGCATTGGTGAAGAACACAGGAAAAGAATCTCTCCAGTGGGGGCTAGCGGCT 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 TCTCTTGATGCATTGGTGAAGAACACAGGAAAAGAATCTCTCCAATGGGGGCTAGCGGCA 360
Query 361 GGGTTGTACTCAGGTATCACTTACGGTATGA-AGGAGGTTCGTGGGGGAGCTCATGATTG 419
||||| ||||||||||||||||||||||||| || |||||||||| ||||||||||||||
Sbjct 361 GGGTTATACTCAGGTATCACTTACGGTATGACAG-AGGTTCGTGGAGGAGCTCATGATTG 419
Query 420 GCGGAACAGCGCGGTGGCTGGAGCATTGACAGGAGCGGCAATGGCTATGACGACGTCCGA 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 GCGGAACAGCGCGGTAGCTGGAGCATTGACAGGAGCGGCAATGGCTATGACGACGTCTGA 479
Query 480 GAGGACAAGCCATGAGCAAGTTGTTCAGTCTGCTCTCACTGGAGCAGCCATTTCCACCGC 539
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 480 GAGGACAAGCCATGAGCAAGTGGTTCAGTCTGCTCTCACTGGAGCAGCTATTTCCACCGC 539
Query 540 CGCTAATCTCCTTTCTAGTGTTTTCTAGATGATTT-TCATTAGAAACTTTAATTG--TAA 596
||||||||||||||||| |||||||||||||||| | ||||||| ||||||| | |||
Sbjct 540 TGCTAATCTCCTTTCTAGCGTTTTCTAGATGATTTGT-ATTAGAAGCTTTAAT-GCATAA 597
Query 597 GGGTTGTTTCTTGTATCAGTTATGttt-tttttGTGAAAACAAATTCTCTAAAGGTCTAC 655
|||||||||| |||||||||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct 598 GGGTTGTTTCATGTATCAGTTATGTTTCTTTTTGTGAAAACGAATTCGCTAAAGGTCTAC 657
Query 656 TAAGATCTTGTCTTAAAACTCT 677
||||||||| || | |||||||
Sbjct 658 TAAGATCTTTTCCTGAAACTCT 679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32752663844
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5