BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493270
Length=1682
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16144.1 | Symbols: AMSH3 | associated molecule with the SH3... 2551 0.0
> AT4G16144.1 | Symbols: AMSH3 | associated molecule with the SH3
domain of STAM 3 | chr4:9137789-9141572 REVERSE LENGTH=1938
Length=1938
Score = 2551 bits (1381), Expect = 0.0
Identities = 1523/1592 (96%), Gaps = 8/1592 (1%)
Strand=Plus/Plus
Query 48 AAATTGAT-TAATCGGATACGGCGAGATGAAGATTGATCTGAACAAGGTGGCTCGTAAAA 106
|||||| | ||||| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 126 AAATTG-TATAATCAGATACGGTGAGATGAAGATTGATCTGAACAAGGTGGCTCGTGAAA 184
Query 107 TCGAAGTCGATAATCGTATTCCTCTCCGTAATTACTACCGCATCGCCGATAATCTCCTCC 166
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 TCGAAGTGGATAATCGTATTCCTCTCCGTAATTACTACCGCATCGCCGATAATCTCCTCC 244
Query 167 GACAGGCCAGTATATATCGGGAAGAGAAGAATGTGGTGGATTTGTATATCATGCTTCTTA 226
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 245 GACAGGCCAGTATATATCGCGAAGAGAAGAATGTGGTGGATTTGTATATCATGCTTCTTA 304
Query 227 GATATTCAAGTTTGATTTCTGAAACAATTCCTTTCCATCGAGATTACCAGGCATCGCTTC 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 GATATTCAAGTTTGATTTCTGAAACAATTCCTTTCCATCGAGATTACCAGGCATCGCTTC 364
Query 287 CACAAGAAAGACTTGGGAGTAGGAAGAGGTTGCGTGCTGTAATCAATGAGCTCGAGTCTC 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 CACAAGAAAGACTTGGGAGTAGGAAGAGGTTGCGTGCTGTAATCAATGAGCTCGAGTCTC 424
Query 347 TGAAACCGGAATTCAACCGGTTAGTGGATAAGCTGAATAGAGTTGAGGATGATTCCCATC 406
|||||||||||||||||| | |||||||||||||||| |||||||||||||| |||| ||
Sbjct 425 TGAAACCGGAATTCAACCAGCTAGTGGATAAGCTGAACAGAGTTGAGGATGAATCCCGTC 484
Query 407 AGGTTGGAAGTGATCTCCCGATTGTATCATATAGTTCAGATGCTGTTGAGTGGCCTCCTG 466
||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 485 AGGATGGAAGTGATCTCCCGGTCGTATCATATAGTTCAGATGCTGTTGAGTGGCCTCCTG 544
Query 467 CTCATAAAGCTTCATACTCCGGACCTGATATTAACAAGCCATTGCCGACATCTCAACCAT 526
|||| ||||||||||||||| ||||||||||||||||||| || ||||||||||||||||
Sbjct 545 CTCACAAAGCTTCATACTCCAGACCTGATATTAACAAGCCCTTACCGACATCTCAACCAT 604
Query 527 CCTGGACGCATAACAATAATCTGACATCATCTTCAAATCGCACACAGATTGATCAGCAAT 586
|||||||| |||||||||||||||| ||||| |||||||| ||||||||||||||||| |
Sbjct 605 CCTGGACGTATAACAATAATCTGACTTCATCATCAAATCGTACACAGATTGATCAGCAGT 664
Query 587 TCCAGAAGCTATCTTTTGATTTTCTGCCTCCAAACCAAGCAACCTTGTCAAGGCATTCAT 646
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 665 TCCAGAAGCTATCTTTTGATTTCCTGCCTCCAAACCAAGCAACCTTGTCAAGACATTCAT 724
Query 647 TTCTAGGTCCGAATGGTCTTAAAAGTCAA-TGGGTTGCACCCACGTCGGAGATAAAGGTT 705
||||||||||||||||||||||||| ||| ||| ||||||||| ||| ||||||||||||
Sbjct 725 TTCTAGGTCCGAATGGTCTTAAAAGGCAAATGG-TTGCACCCAAGTCAGAGATAAAGGTT 783
Query 706 CAATATCCGAGTAATACGGATTGGGGTTCTGCGGACAATTCTGGTTTAATTGAAGCTGGA 765
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 784 CAATATCCGAGTAATACAGATTGGGGTTCTGCGGACAATTCAGGTTTAATTGAAGCTGGA 843
Query 766 CCAAGCGGTTCCTCAGCATCACATAATGGTGATTCTCAAGAAGTCTCAACGCTGAACTCT 825
|| ||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 844 CCTAGCAGTTCCTCAGCATCACTTAATGGTGATTCTCAAGAAGTCTCAACACTGAACTCT 903
Query 826 GTGCTCTCCTTAGATGATGGTCGATGGCAGCGTCATTCTGTGGCAGTAAATTCCCAGTTT 885
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 904 GTGCTCTCCTTAGATGATGGTCGATGGCAGCGTCATTCTGAGGCAGTAAATTCCCAGTTT 963
Query 886 ATTAGTGACGCAACTGAAGACCCGTTTCAGTTTGTCGGTATGAAGCAACCTTCCCCTCCT 945
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 ATTAGCGACGCAACTGAAGACCCGTTTCAGTTTGTCGGTATGAAGCAACCTTCCCCTCCT 1023
Query 946 CCCGTGCTTGCCCAAGTGCATCAAGAGTTAGCCCAAATTTGCCCATCTAAAGTTGCTGAT 1005
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1024 CCCGTGCTTGCTCAAGTGCATCAAGAGTTAGCCCAAATTTGCCCATCTAAAGTAGCTGAT 1083
Query 1006 CCTAGACCAGGACCTGCAATTCCTTCTCTAGAAGGAAAAGAGGGTAGCAATTCTTATCAG 1065
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1084 CCTAGACCAGGACCTGCAATTCCTTCCCTAGAAGGAAAAGAGGGCAGCAATTCTTATCAG 1143
Query 1066 CATTTGCATGTGCCCGTGCGCATAATGGATGATTTCCTAAGGCTAGCTCGGTCAAACACA 1125
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 CATTTGCATGTGCCTGTGCGCATAATGGATGATTTCCTAAGGCTAGCTCGGTCAAACACA 1203
Query 1126 GAAAGGAATTTAGAAACTTGTGGAGTACTTGCTGGCTCTCTGAAAAACAGGGTTTTTCAT 1185
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1204 GAACGGAATTTAGAAACTTGTGGAGTACTTGCTGGTTCTCTGAAAAACAGGGTTTTTCAT 1263
Query 1186 ATCACTACTCTCATAATCCCAAAGCAGGAGTCTACTTCAGATTCTTGCCAAACACTAAAC 1245
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1264 ATCACTACTCTCATAATCCCAAAGCAGGAGTCTACCTCAGATTCTTGCCAAACACTAAAC 1323
Query 1246 GAGGAAGAAATATTCGAAGTACAGGACAGACTCTCTCTATTTCCCTTGGGTTGGATTCAT 1305
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 GAAGAAGAAATATTCGAAGTACAGGACAGACTCTCTCTATTTCCCTTGGGTTGGATTCAT 1383
Query 1306 ACACATCCTACACAAACTTGCTTCATGTCATCAGTTGATCTTCACACACACTACTCATAT 1365
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1384 ACACACCCTACACAAACTTGCTTCATGTCATCAGTTGATCTACACACACACTACTCGTAT 1443
Query 1366 CAGATAATGCTACCGGAGGCAGTGGCAATTGTAATGGCTCCAACAGACGAGTCAACACCT 1425
|||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||
Sbjct 1444 CAGATAATGCTACCGGAGGCGGTGGCAATCGTAATGGCACCAACAGACGAATCAACACCT 1503
Query 1426 CACGGAATATTCCATCTCTCTGATCCATCAGGCGTATCAGTGATCCGTAATTGCCAGCAA 1485
|| ||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 1504 CATGGAATATTCCATCTCTCTGATCCATCAGGCGTATCTGTGATCCGAAACTGCCAGCAA 1563
Query 1486 CGAGGCTTCCACCCACACGAAGAATCAGAAGACGGTAACCCAATATACGAGCATTGCTCA 1545
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1564 CGAGGCTTCCACCCACACGAAGAATCAGAAGACGGTAACCCAATCTACGAGCATTGCTCA 1623
Query 1546 CACGTCTTCCTCAATGCCAAACTCAAATACGAAGTCCTGGATCTCCGCTAAAA-CCAAAC 1604
||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| |
Sbjct 1624 CACGTCTTCCTCAATGCCAAACTCAAATATGAAGTCCTCGATCTCCGCTAAAAGCCAA-C 1682
Query 1605 CCCCCATCACCATGCT-TTATTTTTCCTTGAG 1635
| || ||||||||| | ||||||||||| |||
Sbjct 1683 CTCC-ATCACCATGTTATTATTTTTCCTGGAG 1713
Score = 93.5 bits (50), Expect = 6e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1 TTTCTCAGCGCCATTGATCCTTCGATCTCAGCAAAACTTTCGCCGGAAAATTGATT 56
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 53 TTTCTCAGCGCCATTGATCCTTCGATCTCAGCAAAACTTTCGCCGGCAAAGTGATT 108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83132102520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5