BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493274
Length=2341
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16120.1 | Symbols: ATSEB1, COBL7, SEB1 | COBRA-like protein... 3299 0.0
> AT4G16120.1 | Symbols: ATSEB1, COBL7, SEB1 | COBRA-like protein-7
precursor | chr4:9116302-9119317 REVERSE LENGTH=2454
Length=2454
Score = 3299 bits (1786), Expect = 0.0
Identities = 2132/2294 (93%), Gaps = 43/2294 (2%)
Strand=Plus/Plus
Query 83 TTTAGGGTT-CATGGCTTTAGCTCCCAACTTCATTCCTCCGCTACTTCTACTCTCACTTC 141
||||||||| ||||| || ||||||||||||||| |||| | |||||||||| |||||||
Sbjct 169 TTTAGGGTTCCATGGATTCAGCTCCCAACTTCATCCCTCGGTTACTTCTACTATCACTTC 228
Query 142 TTATCGTATCAATTCCTCTAACGTCATCTCAATCCGACGCCAACACTACTAA----T--C 195
| |||||||||||||||||||| ||||| ||||||||||||||||||||||| | |
Sbjct 229 TCATCGTATCAATTCCTCTAACATCATCACAATCCGACGCCAACACTACTAATCCGTCAC 288
Query 196 CG---CCACCGTCAGATTCGGATCTATGCAACGGCGTATTCATATCATACACTCACACAA 252
|| ||||||||||||||||||||||||||||| |||||| | |||||||||||||| |
Sbjct 289 CGTCACCACCGTCAGATTCGGATCTATGCAACGGTGTATTCGTTTCATACACTCACACTA 348
Query 253 AAGGATCTAAGATCCCACCCAACGACACCGCAAATCAACCCTACCGGTTCGAATCTGTGA 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 AAGGATCTAAGATCCCACCCAACGACACCGCAAATCAACCCTACCGGTTCGAATCTGTGA 408
Query 313 TAACAGTGCTCAACCACGGCCGCGACGAGCTCAAATCATGGCGTGTCTTCGTCAAATTCG 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 TAACAGTGCTCAACCACGGCCGCGACGAGCTCAAATCATGGCGTGTCTTCGTCAAATTCG 468
Query 373 CTCACCGAGAGATCCTCGTGTCTGCTTTAAATGCTGTACTCTCAGACGGCTCGAGCTTAC 432
| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 469 CACACCGAGAGATCCTCGTCTCTGCTTCAAACGCTGTACTCTCAGACGGCTCGAGCTTAC 528
Query 433 CTGTGAGCGTCGAAAACGGCACCGTATTCGCTGGTTATCCTTCGTCGGATTTGAAATCGG 492
| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 529 CGGTGAGCGTCGAAAACGGTACCGTTTTCGCTGGTTATCCTTCGTCGGATTTGAAATCAG 588
Query 493 CTATTCAAACGGCGGGTGATGTCACTCAGATGCAAGCTCGTGTTGAGCTCGTTGGGACTC 552
||||||| || || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 589 CTATTCAGACTGCTGGTGATGTCACTCAGATGCAAGCTCGTGTTGAGCTCGTCGGGACTC 648
Query 553 AGTTCGGAGTTGCGCCGCCGAATGTTCCGCTTCCTAAGAACATCACTCTCGCTATTGATG 612
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 649 AGTTCGGAGTTGCGCCGCCGAATGTGCCGCTTCCTAAGAACATCACTCTCGCTACTGATG 708
Query 613 GATGGAAATGTCCCAAAGCTACTCAAAAAGGTAAAAATGTTCTGCAAGTATGTTGCACGC 672
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 709 GATGGAAATGTCCCAAAGCTACTCAAAAAGGTACAAATGTTCTGCAAGTATGTTGCATTC 768
Query 673 CTGACCCAGACTATGATAACACAGAGATCATTGATAATGAGTTCCTTCCTCGACAAGATG 732
||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| ||||||
Sbjct 769 CTGACCCAGACTATGATAACAGAGAGATCATTGATAATGAGTTTCTTCCACGAAAAGATG 828
Query 733 GAGACCTTACTATCATGTACGATGTGGTCAGATCATATTCATCGAATTATATGGCACAAG 792
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 829 GAGACCTCACTATCATGTACGATGTGGTCAGATCATATTCATCCAATTATATGGCACAGG 888
Query 793 TCACGATGGAGAACCATAACCCGCTTGGCCGGCTGGATAACTGGAAACTGAGTTTTGACT 852
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TCACTATGGAGAACCATAACCCGCTTGGCCGGCTGGATAACTGGAAACTGAGTTTTGACT 948
Query 853 GGATGCGGGACGAGTTTATCTACACCATGAAAGGAGCTTACCCGAGTATTGTTGATTCAT 912
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 949 GGATGCGGGACGAGTTTATCTACACCATGAAAGGGGCTTACCCGAGTATTGTTGATTCAT 1008
Query 913 CAGATTGTGTTGATGGCCCACAGGCGAAGTACTTTCAAGATCTTGACTTTTCGAATGTGT 972
||||||||||||||||||||||||||||| ||| ||||||||||||||| || || ||||
Sbjct 1009 CAGATTGTGTTGATGGCCCACAGGCGAAGCACTATCAAGATCTTGACTTCTCTAACGTGT 1068
Query 973 TAAGCTGTGCAAGACGGCCAACCATCATAGATCTCCCTCCTACGAAATACAATGATTCAA 1032
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1069 TAAGCTGTGCAAGACGGCCAACCGTCATAGATCTCCCTCCTACGAAATACAATGATTCGA 1128
Query 1033 CGTTCGGTCTTATCCCATTTTGCTGCAGAAATGGGACGATTCTACCGCGGTCAATGGATC 1092
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1129 CATTCGGTCTTATCCCATTTTGCTGCAGAAATGGGACGATTCTACCACGGTCAATGGATC 1188
Query 1093 CTAGCAAGTCGAGCTCAGTTTTCCAGATGCAGGTGTACAAAATGCCTCCGGATCTCAATA 1152
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1189 CTAGCAAGTCGAGCTCAGTTTTCCAGATGCAGGTGTACAAAATGCCTCCTGATCTCAATA 1248
Query 1153 TATCTGCTCTATCACCGCCTCAGAACTGGAGAATCAACGGTACACTGAACCCGGATTACA 1212
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1249 TCTCTGCTCTATCACCGCCTCAGAACTGGAGAATAAACGGTACACTGAACCCGGATTACA 1308
Query 1213 AGTGTGGCCCTCCTGTTCGGGTGAGCCCGAGCCAATTCGCCGATCCCAGTGGGTTACCCT 1272
|||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| |
Sbjct 1309 AGTGTGGCCCTCCTGTTCGGGTGAGCCCGAGCCAGTTCGTCGATCCCAGTGGATTACCTT 1368
Query 1273 CAAACAGGACTGCTTTTGCGAGCTGGCAGGTGGTCTGCAACATCACCCAACCAAAAGATG 1332
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 CAAACCGGACTGCTTTTGCAAGCTGGCAGGTGGTCTGCAACATCACCCAACCAAAAGATG 1428
Query 1333 CTAGTCCTAGATGCTGTGTATCGTTCTCTGCCTACTTCAACGACTCGATCGTCCCGTGCA 1392
| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1429 CGAGTCCTAGATGTTGTGTATCGTTCTCTGCCTACTTCAACGACTCAATCGTCCCATGCA 1488
Query 1393 AGACTTGCGCTTGCGGTTGTTCCAGCAACAAAGCAGCTCGCGCTTGCAGCACTACAGCCC 1452
|||| || |||||||| |||||||||||||||||||| ||||||||||| | ||||| |
Sbjct 1489 AGACATGTGCTTGCGGGTGTTCCAGCAACAAAGCAGCCCGCGCTTGCAGTGCCACAGCTC 1548
Query 1453 CGTCTCTTCTTCTACCCCAGCAAGCTCTTCTGGTTCCATTTGAGAACCGAACTGAACTCA 1512
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 CGTCTCTTCTTCTACCGCAGCAAGCTCTTCTGGTTCCATTTGAGAACCGAACTGAACTCA 1608
Query 1513 CTGGCGCTTGGGCTTATCTAAAACATCGGCCGGTGCCAAACCCAATGCCTTGTGGGGATA 1572
| | ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 1609 CCGTCGCTTGGGCTTATCTAAAACAACGGCCCGTGCCAAACCCGATGCCTTGTGGGGATA 1668
Query 1573 ACTGCGGGGTTAGCATCAATTGGCATTTGGCTACAGATTATCGAGGCGGATGGACAGCCC 1632
||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1669 ACTGCGGAGTTAGCATCAACTGGCATTTGGCTACAGATTATCGAGGTGGATGGACAGCCC 1728
Query 1633 GGGTCACAGTCTTCAACTGGGGCGAAACAGATTTTGTAGATTGGTTTACCGCAATTCAGA 1692
|||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 1729 GGGTCACAGTCTTCAACTGGGGAGAAACAGACTTTGTAGATTGGTTTACCGCGGTTCAGA 1788
Query 1693 TGAAAAACGCTGCCCCGGGTTTCGAGAAAGCCTACTCATTCAATGCATCTACACTTGGTA 1752
||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1789 TGAAAAATGCTGCACCGGGTTTCGAGAAAGCCTACTCATTCAATGCATCTACAATTGGTA 1848
Query 1753 TCAACGGGGAGAACAATACTATTTTCATGGAGGGCCTTCCCGGATTGAATTATCTCGTAG 1812
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1849 TCAACGGGAAGAACAATACTATTTTCATGGAGGGCCTTCCTGGATTGAATTATCTCGTCG 1908
Query 1813 CGGAAAGAGACGGGGAGAATCCGTTGAAGAATCCTCGGATTCCCGGGAAACAACAGTCTG 1872
| |||||||||||||| ||||| |||||||||||||||||||| || |||||||| ||||
Sbjct 1909 CAGAAAGAGACGGGGAAAATCCATTGAAGAATCCTCGGATTCCAGGAAAACAACAATCTG 1968
Query 1873 TTATTTCCTTCACCAAGAAACTGACTCCTGGGATTAATGTCCCTGGTGGAGATGGCTTCC 1932
|||| ||||| || ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1969 TTATGTCCTTTACTAAGAAACTGACTCCTGGAATCAATGTCCCTGGTGGAGATGGCTTCC 2028
Query 1933 CGAGCAAAGTGTTCTTCAACGGTGAGGAGTGCTCTCTCCCAACCATACTCCCAGTGAGAA 1992
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2029 CGAGCAAAGTGTTCTTCAACGGTGAGGAGTGCTCTCTCCCAACCATACTCCCAATGAGAA 2088
Query 1993 GCAGCCAACACCGGAGACACATCTCTGCTTTCCTCCTTGCATTACCTGTGTTGGCTCTCT 2052
| ||||||||||||| ||||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 2089 GTAGCCAACACCGGAAACACATCTCTGTTTTCCTCCTGGCATTACCTGTTTTGGCTCTCT 2148
Query 2053 TGATTTTGCGGGTGTAACTACACTGAAACCTCCTGTTGGGTTGGCGATACAGTTTCTTGA 2112
||||| |||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2149 TGATTCTGCGGGCGTAACTACACTGAAGCCTCCCGTTGGGTTGGCGATACAGTTTCTTGA 2208
Query 2113 TTCTTCCC----T--C-CG----CGG-T----T------T--ATGGATGGAGAATCAATC 2148
|||||||| | | || ||| | | | ||||||||||||||| ||
Sbjct 2209 TTCTTCCCCGGCTTACTCGAGAACGGGTCCAATCCGCAGTTTATGGATGGAGAATCACTC 2268
Query 2149 GATTCTTTTTCAACCTGTGATAAGTGTTGGAAGAAGCTTTATATAGGTGCTATGAAGATA 2208
||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||
Sbjct 2269 GATTCTTTTTCAACCTG--ATGAGTGTTGGAACAAGCTTTATATAGGTGCTATGAAGATA 2326
Query 2209 TATATGTTACCATTCTTGTATTGTTTAAGATTAGAGTTTTTCAGTAATCACTAATCAGTA 2268
| |||||||||||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct 2327 T----GTTACCATTCTTGTATTGTTTATGATTAGAGAATGTCAGTAATCACTAATCAGTA 2382
Query 2269 TGTAT-ACTATATTTTGTTTACTCTTTCTCGGCCATTGATTTGTTCCTAATCCTCTCCAA 2327
||||| |||||||||||||||||| ||||| ||||||| |||||||||||||||| | ||
Sbjct 2383 TGTATTACTATATTTTGTTTACTCATTCTCCGCCATTGGTTTGTTCCTAATCCTC-C-AA 2440
Query 2328 ACCGGTATTCATAT 2341
||||||||||||||
Sbjct 2441 ACCGGTATTCATAT 2454
Score = 110 bits (59), Expect = 9e-23
Identities = 66/69 (96%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 1 TTTTCATTACAGCTTGCACTAACCCGGTCGCTTTATCAGTCATCATCTCTTCAAAAAGCT 60
||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 33 TTTTCATTACAGCTTGCACTATCGCGGTCGCTTTATCAGTCATCATCTCTTCAAAA-GCT 91
Query 61 TCCAttttt 69
|||||||||
Sbjct 92 TCCATTTTT 100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116214261675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5