BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg493277
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16095.1 | Symbols: | RNI-like superfamily protein | chr4:9... 774 0.0
AT1G53350.1 | Symbols: | Disease resistance protein (CC-NBS-LR... 130 2e-29
> AT4G16095.1 | Symbols: | RNI-like superfamily protein | chr4:9104547-9105237
FORWARD LENGTH=564
Length=564
Score = 774 bits (419), Expect = 0.0
Identities = 491/526 (93%), Gaps = 3/526 (1%)
Strand=Plus/Plus
Query 28 GAGAACAGTAGTGTGAAAGACCTTCTTGGTATGACTAAGCTCAGAACTCTCACTGTCCAT 87
|||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 40 GAGAGCAGTAGTGTGGAAGACCTTCTTGGTATGACTAAGCTCAGAACTCTCACGGTCCAT 99
Query 88 TCCCTTGATGGTTGTACTTTAGAAACTCTGTCTGCATCTCTCCATGAATCGAGAGAACTC 147
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 100 TCCCTTGATGGTTGTACGTTAGAAACTCTGTCTGCATCTCTCTGTGAATCGAGAGAACTC 159
Query 148 GAGCATCTTTCATTGTACGAGGTCATGCATGGTAGGCATAATGAAGGAAAATTAGTTCTT 207
| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 160 GGGCAGCTTTCATTGTACGAGGTCATGCATGATAGGCATAATGAAGGAAAATTAGTTCTT 219
Query 208 GATTCGATTCATCTCAAATTTTTAACGGTGGGCATGCATATGACTAGATTGCCTGATCAA 267
|||| |||||| |||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 220 GATTTGATTCAACTCAAATTTTTAACGGTGGGCATGCATATGCCTAGGTTGCCTGATCAA 279
Query 268 CATCGATTCCCTCCAAACCTTGCGCACATATGTCTTCGGTATTGTTGCATGGAAGAGGAT 327
||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct 280 CATCGATTCCCTCCAAACCTTACGAACATATGTCTTCGGTATTGTTGCATGGAAGATGAT 339
Query 328 CCAATGCCGATTCTAGAGAAGTTGCTTCACTTGAAATTTGTTGAACTATCATATCGTGCT 387
|||||||||||||||||||||||||| ||||||||||| |||||| |||||||| |||||
Sbjct 340 CCAATGCCGATTCTAGAGAAGTTGCTCCACTTGAAATTGGTTGAATTATCATATGGTGCT 399
Query 388 TTCACTGGGAAGAGGATGGAGCTTCCGGACGAGCTCATATACATAACATCCTTAAAAGAA 447
||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||| ||
Sbjct 400 TTCACTGGGAAGAAGATGGAGCTTCCGGATGAGGTCATATACATAACATCCTTAAAACAA 459
Query 448 CTCACAATTGGGTGGAGGGA-TAGTGAATGGGGGTGGAAATTGTCTGAAAGAGGACAAGA 506
|| |||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 460 CTGACAATTGGA-GGAAGGAATAGTGAATGGGTGTGGAAATTGTCTGAAAGAGGACAAGA 518
Query 507 TCACTATAAAGTCCACCACATTCCC-GTGTTCATTTTATTTACTAG 551
|||||| ||||| ||||||||||| ||||||| ||||||||||||
Sbjct 519 TCACTACAAAGTTCACCACATTCCTTGTGTTCAGTTTATTTACTAG 564
> AT1G53350.1 | Symbols: | Disease resistance protein (CC-NBS-LRR
class) family | chr1:19903899-19907515 FORWARD LENGTH=2784
Length=2784
Score = 130 bits (70), Expect = 2e-29
Identities = 166/211 (79%), Gaps = 12/211 (6%)
Strand=Plus/Plus
Query 202 GTTCTTGATTCGATTCATCTCAAA-TTTTTAACGGTGGGC-ATGCATATGACTAGATTGC 259
|||||||||| |||||||| ||| |||||| | | | |||||| || | || || |
Sbjct 2224 GTTCTTGATTTTATTCATCT-AAAGGATTTAAC-ATTGTCAATGCATCTGCCAAGGTTTC 2281
Query 260 CTGATCAACATCGATTCCCTCCAAACCTTGCGCACATATGTCT--TCGGTATTGTTGCAT 317
| |||||| | ||||||||||| ||||||| |||||||| || |||| | || ||||
Sbjct 2282 CGGATCAATACCGATTCCCTCCTCACCTTGCCCACATATGGCTAATCGG-A-TGCCGCAT 2339
Query 318 GGAAGAGGATCCAATGCCGATTCTAGAGAAGTTGCTTCACTTGAAATTTGTTGAACTATC 377
||| || |||||||||||||||||||||||||||||||| ||||||| ||| | || ||
Sbjct 2340 GGAGGAAGATCCAATGCCGATTCTAGAGAAGTTGCTTCATTTGAAATCGGTTTATCTTTC 2399
Query 378 ATATCG-TGCTTTCACTGGGAAG-AGGATGG 406
|| || ||| ||| ||||||| || ||||
Sbjct 2400 ATC-CGGTGCATTCT-TGGGAAGGAGAATGG 2428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28733932084
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5